Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01456 ATGTCGTCTCTACATTTCCTCTGTTTTCTCTCTCTCTTGGGCTTCCTCACCGGAATCAAGTCCGACGAACGTCAGATCCTAACCAAACTCCAAACCAATCTCCAAAGCTCGAACACCAAGGCGTTTGAAAATTGGGGACACGAAACCCCCATCTGCAACTTCACCGGAATCACCTGTAATTCCGACGAGTTCGTCACCGGAATCGACCTCTCCAAAAGGGGTTTATCAGGGGTTCTTCCATTTGATGCCATTTGTGAACTGAAATCATTGGAGAAGCTAGCTTTTGGGTCGAATTCCTTGCACGGCGGAGCAACGGAGAGCTTGAACAAGTGTGTCAAATTGAAATATTTGGATCTGGGTATCAATTCCTTCTCTGGGTCCTTCCCCAACATACATTCTTTGACGGAATTGCAGTATCTGTACTTGAATTTAAGTGGGTTTTCCGGGAAGTTTCCATGGAAATCCGTCGAGAATTTTACTGGGTTGATCGAGTTGAGCCTTGGCGATAACGCTTTCGACAACGCCACGTTTCCGGTGGAGGTCACAGCTTTGAAGAAGCTCACATGGCTTTACTTGTCGAATTGCAGCTTAACAGGGGAGATTCCGAGGGCTATTGGGAATCTTACAGAGCTTCGGAGTTTGGAATTCTCGGAAAATTACATCACCGGGGGAATTCCGGCGGAGATTGTGAATTTGCAGAATCTATGGCAGTTGGAGTTTTACGGCAATCAATTGACGGGGAAACTTCCGGCGGGGCTGAGAAACCTAACCCGGCTGAAGAATTTCGATGGTTCGATGAATTTTATAAGTGGGGATTTGTCGGAGGTGAGGTTTTTGACGAATTTGGTTTCTCTGCAACTGTTTGATAATGAAATCTCCGGCGGTGTTCCGGCGGAGCTTGGTGAGTTCAAGTCGCTGGTGGATCTTTCGCTTTATAGTAATCGGCTTACAGGTCCGCTGCCGCAATTGATTGGTTCTTGGTCGGATTTTGATTACATTGATGTGTCTGAAAATTTCTTGTCGGGATCTATTCCGCCGGATATGTGTAAGAAAGGGACGATGAAGAAGCTTCTCATTCTTAAGAACAATTTCTCCGGCGAGATTCCGGCGACTTACGGTAATTGCTCAACTTTAACGCGATTTAGAGTTAGTGAGAACTCGCTCACCGGTGTTGTTCCATCTGGGATTTGGGGATTGCCGAATGTGAATATAATTGATCTAGCGTCAAATCAATTGGAAGGTTCGATCACTTCTGATATTGGGAAGGCGGTGGCTCTCTCAGAATTACGTGTTGAGAATAATCGATTATCTGGTCGTTTGCCATTGGAGATTTCGCAAGCAAAATCTCTTACTAAAGTTAGTTTGAGCAATAATGAGTTTTCAGGTGAACTTCCGGCAACTATTGGTGACTTGAAGCATCTTGACAGCCTCGAATTGCAGAGCAACAGATTCTCTGGCTTGATTTCAGAGACGATTGGCTCGTGTGATTCCCTGTCTATCGTCAATTTCGCGGAAAATTTGTTCTCGGGAAAAATCCCTTCGTCTCTAGGGTTTCTTGCTGTTCTAAATTCACTGAATCTCTCCAATAACGCCCTCTCTGGTGAAATCCCCTCGACGTTTTCGCATCTAAAGTTAAGTTTTCTCGATCTTTCGAATAATCAGTTAACTGGTCCGGTACCAGAATTGCTTGCGAATGGAGCTTACAATGAAAGCTTCGCCGGAAACCCCGGCCTCTGTAGTGATGTTGATGGCGTTTTACAGCGATGCTCACAGAGATCCGACGATTCCAAGCACGTTCGTACATTCGTTATCTGTTTCGCCATCGGATTACTTCTTCTCAGCATAACAGTATGGTGCTTCATAACGTTAAAAAAGAGTGAAAAAGACAGAGATTGGTCGCTTAAAGAGGAATCGTGGGACCTAAAATCCTTCCATGTAATGTCATTCACAGAGGACGAGATTCTCAATTCCATTAAAGACGAGAATCTTATCGGAAAAGGAGGTTCCGGCAACGTTTATAAAGTGACGGTAGGAAATGGGAAAGAGTTTGCAGTGAAGCATATATGGAACACCAATCCGTACGACGACAAGAGGAGGAACCGAAGCTCGTCGCCGATTCTCCAAAAACAAAGAACGAAATCCTCAGAATTCGATTCAGAGGTGAAGACTCTAAGCTCAATCCGACATGTAAACGTGGTGAAGCTCTACTGCAGCATTACAAGTGAGGTTTCAAATCTATTGGTGTACGAATATATGCCTAATGGAAGCTTATGGGACAGACTTCACACATCCAGAAAAATGGAATTGGACTGGGAAACAAGATACAAAATCGCTGTCGGAGCAGCAAAGGGGTTAGAGTATCTTCATCACGGCTGCGACCGACCAGTGATCCACCGAGACGTTAAGGCCAGTAACATACTCTTGGACGAATTTCTAAAACCAAGAATTGCAGACTTTGGACTAGCCAAAATGCTTCAAGCTAGTGGATTCACCGAGAGCTCCCACGTCATCGCAGGCACCCCAGGCTACATCGCTCCAGAATACGGGTATACCTACAAAGTCGACGAAAAGAGTGACGTGTACAGTTTCGGGGTCGTGTTGTTGGAGTTGGTGAGCGGGAAGAAGGCGATCGAGGCGGAGTTCGGGGAGAACAAGGACATAGTGGAATGGGTATCAAACAATTTGAAGACAAGAGAAAGGGTATTGAGCTTGGTAGACTCAAGGCTAGGAGACATGTTTAAAGAGGACGCCATAAAGGTCCTGAGAATTGGGATTTTGTGCACAGCCAGGGCTCCGACATCGAGACCGACAATGAGAAGCGTGGTCCAAATGCTACAAGAAGCCCAACCTTGTGGGTTAATTATTCGAGGCATGTCGGCCCAGTTTTTCTGTCGGCCCATTAATGTTATTGGGCCTGTTGGAATAGTACCATGGGCCACCATCATGGGCTTGGGTGATTTCTAA 2964 45.68 MSSLHFLCFLSLLGFLTGIKSDERQILTKLQTNLQSSNTKAFENWGHETPICNFTGITCNSDEFVTGIDLSKRGLSGVLPFDAICELKSLEKLAFGSNSLHGGATESLNKCVKLKYLDLGINSFSGSFPNIHSLTELQYLYLNLSGFSGKFPWKSVENFTGLIELSLGDNAFDNATFPVEVTALKKLTWLYLSNCSLTGEIPRAIGNLTELRSLEFSENYITGGIPAEIVNLQNLWQLEFYGNQLTGKLPAGLRNLTRLKNFDGSMNFISGDLSEVRFLTNLVSLQLFDNEISGGVPAELGEFKSLVDLSLYSNRLTGPLPQLIGSWSDFDYIDVSENFLSGSIPPDMCKKGTMKKLLILKNNFSGEIPATYGNCSTLTRFRVSENSLTGVVPSGIWGLPNVNIIDLASNQLEGSITSDIGKAVALSELRVENNRLSGRLPLEISQAKSLTKVSLSNNEFSGELPATIGDLKHLDSLELQSNRFSGLISETIGSCDSLSIVNFAENLFSGKIPSSLGFLAVLNSLNLSNNALSGEIPSTFSHLKLSFLDLSNNQLTGPVPELLANGAYNESFAGNPGLCSDVDGVLQRCSQRSDDSKHVRTFVICFAIGLLLLSITVWCFITLKKSEKDRDWSLKEESWDLKSFHVMSFTEDEILNSIKDENLIGKGGSGNVYKVTVGNGKEFAVKHIWNTNPYDDKRRNRSSSPILQKQRTKSSEFDSEVKTLSSIRHVNVVKLYCSITSEVSNLLVYEYMPNGSLWDRLHTSRKMELDWETRYKIAVGAAKGLEYLHHGCDRPVIHRDVKASNILLDEFLKPRIADFGLAKMLQASGFTESSHVIAGTPGYIAPEYGYTYKVDEKSDVYSFGVVLLELVSGKKAIEAEFGENKDIVEWVSNNLKTRERVLSLVDSRLGDMFKEDAIKVLRIGILCTARAPTSRPTMRSVVQMLQEAQPCGLIIRGMSAQFFCRPINVIGPVGIVPWATIMGLGDF 987
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10227901 10231170 - CmaCh01G014560.1 Cma01g01456 287149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01456 987 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 5 957 - -
Cma01g01456 987 SUPERFAMILY L domain-like 281 565 - -
Cma01g01456 987 Pfam Leucine Rich Repeat 186 208 IPR001611 GO:0005515
Cma01g01456 987 SMART serkin_6 658 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01456 987 Gene3D Ribonuclease Inhibitor 277 351 IPR032675 -
Cma01g01456 987 SUPERFAMILY Protein kinase-like (PK-like) 649 945 IPR011009 -
Cma01g01456 987 Gene3D Phosphorylase Kinase; domain 1 641 751 - -
Cma01g01456 987 Gene3D Ribonuclease Inhibitor 20 175 IPR032675 -
Cma01g01456 987 PANTHER RECEPTOR-LIKE PROTEIN KINASE 7 5 957 - -
Cma01g01456 987 Pfam Leucine rich repeat N-terminal domain 21 60 IPR013210 -
Cma01g01456 987 MobiDBLite consensus disorder prediction 695 714 - -
Cma01g01456 987 Gene3D Ribonuclease Inhibitor 352 592 IPR032675 -
Cma01g01456 987 Gene3D Transferase(Phosphotransferase) domain 1 752 951 - -
Cma01g01456 987 ProSitePatterns Serine/Threonine protein kinases active-site signature. 796 808 IPR008271 GO:0004672|GO:0006468
Cma01g01456 987 Pfam Protein kinase domain 660 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01456 987 ProSiteProfiles Protein kinase domain profile. 658 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01456 987 ProSitePatterns Protein kinases ATP-binding region signature. 664 686 IPR017441 GO:0005524
Cma01g01456 987 Gene3D Ribonuclease Inhibitor 176 276 IPR032675 -
Cma01g01456 987 SUPERFAMILY L domain-like 52 345 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01456 Cma09g00611 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01456 Cma-Chr1:10227901 Cma09g00611 Cma-Chr9:2889430 0 dispersed
Cma18g00392 Cma-Chr18:2147366 Cma01g01456 Cma-Chr1:10227901 0 dispersed
Cma01g01455 Cma-Chr1:10221745 Cma01g01456 Cma-Chr1:10227901 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68291 PF00069 Pkinase 6.40E-43 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01456 - - csv:101223100 1462.59