Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01458 ATGGCTGGAGTTCTCAGAGAAAGAGCACTGTCTCTCCTCGCCGCCGCTAACAACCACGGCGATTTAACGGTGAAAATTTCATCTTTGAAGCAGGTAAAGGATATTATACTGTCCATCGAGCCATCTTTCGCTGCAGAGCTTTACTCCTACTTGGTCGAGCTTCAGTCCTCCCCCGAGAGCTTACTACGTAAATTGTTGATTGAGGTGATTGAAGACATTGGATTAAGAGCCATGGAACATTCTCCTCTGTTAATGTCAGTTTTATTGGCATCTTTAAAGGATGAAGACTCTGTTGTAGCAGGACAATCAATTATTAGTGGCCAAAAATTATTTTGTGGTACTTTAAGAGAGATGACATTGCAGTTCCATCAGCGGGGTAAAGTTGATAGATGGCTTGAAGAAATGTGGATGAGAATGTTGAAGTTTAAAGATGATGTTTTGGCAATTGCTATAGAGCCTGGTTCTGTCGGGAAGAGGTTGCTGGCTTTGAAATTTTTGGAAACATATGTTCTACTTTTTACGTCTGACACAAATGATCCACAGAAAGCTATCTCAGAAGGAAATGGGGATGTTTTTAACATTTCATGGCTAGCTGGTGGTTTTTCTATTTTGGATCCAGTCGGGTTAATGTCAGAAGCTAGTAGGATGCTTGGTATTCTGTTGAATTTGTTGCAGACCAGTTCTGTTCCGGGTACATACACAGTAACAGTTGTTAGTAGATGTGTATTCTTTGTTGTTGGGCTATCATTTGATATGATTGGTGGGGGCCTCAAAACTTTAGCACATAGCAGTGACCTCTATTTTGCCCTTGTCATTACTATCTTGAAAATTGTGAAGGGACAATTGAAGCCTGGATCAGAAAATGGAGTAGCAAAGCTAGATGGTGTTAGACTGCAAAATTGTTTGGGTACTTCGGAGCACCAGTGGCCAGGGATAGGAATGGACAACTGGTGCAATGATTACCTTATTTTAGCAGCTATAGCAAGGAAAAGACCAGTTCATTATGGTCACATTCTATCGGCACTGCTGGAACTGGTTCCAAGTTTTGAGATGGTAAGGGGGCGTCATGCTGCCAGCATTCAGTATTCTATAAGATCTGCCCTTTTGGGATTCCTAAGGTGTATGCATCCAGCTTTTGTAGAGTCAAGAGATAGATTGCTAAAGGCTTTAAGAGCTATGAATGCTGGAGATGCTGCAGATCAGGTTATCAGGCAAGTGGACAAAATGGTGAAGGCTGCAGATCGAGCTTCGCGTGATGCTTGGCTGGCCAAGGATGATCAATCATCAATTCAGCATAATGCATCAGTGGATCTAACAAGAAAAAGACCTAGGCTTCTGGACGATGAAGAACTTTCCAATGGTCGTGAGGTTTCCAAGCAAAGTCGTTTTGGTCCAGATTTTCACCTAATCTCCCCAAATCAAAAAGATGGTTCTCTGCAGAATGCCGTCTCTAATGGGACATCTGTTCCTGCGTTAGATGTTGAATTAACTCCAGCAGAGCAGATGGTTGCCATGATTGGTGCCTTACTTGCTGAAGGGGAGCGAGGTGCAGAGTCGCTTGAAATTCTGATTTCAAATATTCATCCTGACTTGTTAGCTGATATTGTCATAACTAACATGAAGAACTTGCCCAAAGCATCCCCTCCTTTAACTAGGCATGGGGACTTGCCTGTAACTCGTCAAGGAAGTAGTCATGTGAAGGTTCTGACACCATCAGCCCCATTGAGTTCTGTGCAAACTTCAGTTGCTACTGCACAAGTTCCTTTTTCTTTGGTCACCTCAGCTGGTTCAACTTTGGCTGAGTCTACCGTCAATAGTCTCCCTGTTGATTCTAAACGTGATCCAAGAAGGGATCCCCGTCGCCTTGATCCTCGCCGTGGAGGAGTATCTTCTGCTTCTAGTGTGGAAGAGGAAAGTTCAAATATATCTGATATTGACAACTCCATATCTTTGGGAAAATCTGCTTCAGTTCCTGTTACTGCGACGATCGAGAATTCCTTGGTATCTCCTATAGCAAAAACGAAAGTTGAAGAAAAAATCGTAGAGACCCCATTCGACCTTGGAACAGACCAATTAACCCCCAAATCAAATTCTCCTGATAGAGCCAAGAAAGTCGAAACTATATTAGAAATTAGTGCCCCTCTGGATCCCATGCCTTCTGCTGTTGGAAAAGCTGATGATGGTTTAGTGGCCGTTAATTTGCTCGATGACTCAGCGCCAAAGAGGGATGATACACCATCTTCCATGGAATATGATCAGTATTCTCCATCAGTTACAAATGCAGCTGCACCTGAAGATACCTGCGAGGAATTGCCTCTGCTTCCACCATACGTTGACTTGACTCCAGAACAGCAAATAACTGTAAGAAATTTGGCAGCTGAAAAGATATTTGATTCATGTAAGAATTCCACTGGAGCAGATTGCAATCAGATACGCTTGGCAATAATTGCTCGATTGGTTGCTCAGGTTGATGCTGACGATGATATTGTTCGAATGTTGGAAAAACAAGTCGCTATTGATTACCAACAGCAAAAGGGGCACGAGCTTGCTTTGCATGTCTTATATCACCTACGTTCACTTGATATTCTGGATTCAGTTGAAAGCTCTTCTTTTGCTGTTTACGAGAAGTTTCTTCTAGTTGTGGCTAAATCTTTGCTAGATTCTTTTCCAGCTTCAGACAAATCTTTTAGCAGACTTCTTGGTGAAGTTCCAACTTTGCCCAACTCTACATTGGAACTCTTACGTAACCTTTGCTATTGTGATAATGATGACAACCACGGGAATGATACTCCTGATATTGACCGTGTCACTCAAGGCCTTGGCACTGTTTGGAATTTGATTGTGAAGCGGCCATATAGTCGGCAGGCTTGCTTAGATATTGCTCTAAAGTGTGCTATGCATTCAGAAGTTAAGGTTCGAGCAACAGCTATTAGACTGGTGGCAAACAAACTCTACCGGTTAAGTTACATTTCAGATAGGATTGAGCAGCATGCAACAAACATGTTCCTGTCTGCAGTAGACGATGGAGATAGGACAGATGTAGTGCCTTCACCATGTGTATCAATTGAACAAAGAGCTGGAGCAGAGGGGGAGAGTCAGGAAACATCCGTCTGCGGTTCTCAAGTTTCAGATCCTGGAACCTCAGAATACGATTCCATGAGGAGTTCACAACCTACAGTTCGTAGCAGTTCAACCTCGTCACTTTCAGAAGCTGAAAGACATATTTCTCTTCTTTTTGCTTTATGTGTGAAGAAACCTCGTCTTCTTCAGTTTGTATTTGATGCTTATGGACGGGCTTCTAGATCAGTGAAAGAGGCCGTTCATGAACATATCCCTAATCTTATTACGGCCTTAGGGTCATCTGATTCTGAATTGCTTAGAATAATTTCAGATCCGCCTAAAGGAAGTGAACATCTTTTAGCATTGGTACTACAGGTGCTAACTCGAGAGACAATGCCTTCTTCTGATCTGATCGCAACCGTTAAACATTTATATGAAACTAAACTCAAGGACGTGACAATTCTCATTCCAATGTTGCCCTCACTTTCCAAAAATGAGGTTTTACCTATTTTTCCTCGATTGGTGGATCTTCCATTGGAGAAGTTTCAGAGAGCGTTGGCTCACATATTACAGGGTTCAGCACATACACGTCCAGCTTTAACACCTGTTGAAGTGTTGATTGCCATCCACAACATAATTCCTGAAAAAGATGGCCTTGCATTAAAGAAGATAACGGATGCTTGTTCAGCTTGTTTTGAGCAACGTACAGTTTTCACTCAGCAGGTTTTAGCAAAAGCCTTGGGCCACATGGTTGAACAAACCCCACTCCCTCTTCTCTTCATGAGAACTGTGATTCAGGCAATTGATGCTTTTCCTACTCTGGTTGATTTTGTTATGGAGATACTTTCCAAACTTGTAAACAGACAGGTCTGGAGGATGCCGAAACTGTGGTTTGGTTTTTTGAAATGTGCATTTCAGATGCAGCCACATTCCTTTCGAGTACTATTACAGTTGCCACCGCCACAACTTGAAAATGCTTTGAACAAATATGCTAACCTTAAAGGTCCTCTTGCTGCTTATGCCAGCCAGCCCAGCACAAAATCTACTCTCTCTAGACCGATGCTCGTAGTTCTGGGTCTTGAAAATGAAAGGCATTTGTAG 4161 42.56 MAGVLRERALSLLAAANNHGDLTVKISSLKQVKDIILSIEPSFAAELYSYLVELQSSPESLLRKLLIEVIEDIGLRAMEHSPLLMSVLLASLKDEDSVVAGQSIISGQKLFCGTLREMTLQFHQRGKVDRWLEEMWMRMLKFKDDVLAIAIEPGSVGKRLLALKFLETYVLLFTSDTNDPQKAISEGNGDVFNISWLAGGFSILDPVGLMSEASRMLGILLNLLQTSSVPGTYTVTVVSRCVFFVVGLSFDMIGGGLKTLAHSSDLYFALVITILKIVKGQLKPGSENGVAKLDGVRLQNCLGTSEHQWPGIGMDNWCNDYLILAAIARKRPVHYGHILSALLELVPSFEMVRGRHAASIQYSIRSALLGFLRCMHPAFVESRDRLLKALRAMNAGDAADQVIRQVDKMVKAADRASRDAWLAKDDQSSIQHNASVDLTRKRPRLLDDEELSNGREVSKQSRFGPDFHLISPNQKDGSLQNAVSNGTSVPALDVELTPAEQMVAMIGALLAEGERGAESLEILISNIHPDLLADIVITNMKNLPKASPPLTRHGDLPVTRQGSSHVKVLTPSAPLSSVQTSVATAQVPFSLVTSAGSTLAESTVNSLPVDSKRDPRRDPRRLDPRRGGVSSASSVEEESSNISDIDNSISLGKSASVPVTATIENSLVSPIAKTKVEEKIVETPFDLGTDQLTPKSNSPDRAKKVETILEISAPLDPMPSAVGKADDGLVAVNLLDDSAPKRDDTPSSMEYDQYSPSVTNAAAPEDTCEELPLLPPYVDLTPEQQITVRNLAAEKIFDSCKNSTGADCNQIRLAIIARLVAQVDADDDIVRMLEKQVAIDYQQQKGHELALHVLYHLRSLDILDSVESSSFAVYEKFLLVVAKSLLDSFPASDKSFSRLLGEVPTLPNSTLELLRNLCYCDNDDNHGNDTPDIDRVTQGLGTVWNLIVKRPYSRQACLDIALKCAMHSEVKVRATAIRLVANKLYRLSYISDRIEQHATNMFLSAVDDGDRTDVVPSPCVSIEQRAGAEGESQETSVCGSQVSDPGTSEYDSMRSSQPTVRSSSTSSLSEAERHISLLFALCVKKPRLLQFVFDAYGRASRSVKEAVHEHIPNLITALGSSDSELLRIISDPPKGSEHLLALVLQVLTRETMPSSDLIATVKHLYETKLKDVTILIPMLPSLSKNEVLPIFPRLVDLPLEKFQRALAHILQGSAHTRPALTPVEVLIAIHNIIPEKDGLALKKITDACSACFEQRTVFTQQVLAKALGHMVEQTPLPLLFMRTVIQAIDAFPTLVDFVMEILSKLVNRQVWRMPKLWFGFLKCAFQMQPHSFRVLLQLPPPQLENALNKYANLKGPLAAYASQPSTKSTLSRPMLVVLGLENERHL 1386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10240832 10263572 - CmaCh01G014580.1 Cma01g01458 287151

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01458 1386 MobiDBLite consensus disorder prediction 545 565 - -
Cma01g01458 1386 Gene3D - 2 422 IPR011989 -
Cma01g01458 1386 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 1 240 - -
Cma01g01458 1386 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 324 1385 - -
Cma01g01458 1386 MobiDBLite consensus disorder prediction 610 625 - -
Cma01g01458 1386 Pfam Symplekin/PTA1 N-terminal 96 400 IPR032460 -
Cma01g01458 1386 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 1 240 - -
Cma01g01458 1386 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 324 1385 - -
Cma01g01458 1386 MobiDBLite consensus disorder prediction 738 759 - -
Cma01g01458 1386 Pfam Symplekin tight junction protein C terminal 1171 1349 IPR022075 -
Cma01g01458 1386 SUPERFAMILY ARM repeat 18 1305 IPR016024 -
Cma01g01458 1386 MobiDBLite consensus disorder prediction 1028 1066 - -
Cma01g01458 1386 MobiDBLite consensus disorder prediction 1025 1066 - -
Cma01g01458 1386 MobiDBLite consensus disorder prediction 600 649 - -
Cma01g01458 1386 MobiDBLite consensus disorder prediction 632 649 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01458 K06100 SYMPK; symplekin - csv:101202828 1746.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01458 Cma-Chr1:10240832 Cma03g00347 Cma-Chr3:4152297 9.64E-43 dispersed
Cma01g01458 Cma-Chr1:10240832 Cma09g00609 Cma-Chr9:2861808 3.06E-134 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g565 Blo01g01788 . . . Bpe02g00153 . . Bma01g02573 . . Cma01g01458 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00180 . . . Bda11g00813 . . . . . . Cmo01g01510 . . . . . . . Bhi09g02541 Tan01g3888 . . Hepe01g2195 Mch11g0740 . . . . . . . . . . . Cme04g00208
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004558 1 4 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 3 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01458 Cma_Chr01 FPKM 4.695977 4.618859 4.83591 5.112211 6.459669 5.791056 7.138451 7.888778 7.596828 7.69283