Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01461 ATGGAGTTGAATGAACACTGTTTGTTAGATGAACTTCAAGCTTTGAGAAGAGAAATTAATTGGGAATTAGCAATGCCCACTGAAATTAACGACCTAATCTCCACTGCTAATGGCTGGAATTTTGATTGCTCTGATGCTTCTTCTTTCCCCTTTTCTTTACCTATTGACCACCAGGATTTTGGCTATCTTCTCTGCGGGGAAGATGACTATTCTTTTCCCGACGGCCAGTTCACGGCGGCTCCGAGTACCGGCGATTCGATGTCGTACACTACGTTCGAGACTACGCCGGGGGGTTTCGGCAGGTGTCCGGTTATGGAAGAGGAGGATGAGATTCCGAATCTTGAAGTTCTGGGTAGTTGTAAAATGGAGCCGGCTTATTCTCCTGAAATTGTTCCGGTTTTCAACGCCGGTGGCACGTGCGATTTTGGCCAAAAGATCGTTAGTTCGGCGAGTAAGAAACTTCAGGGGAAGCCGTCGAAGAATCTCATGGCGGAGAGACGGCGGAGGAAGCGGCTTAATGATCGCCTCTCCATGCTCCGATCCATCGTCCCCAAAATCAGCAAGATGGATAGAACTGCGATTCTTGCGGATTCAATCGATTACGTGAAGGAACTGCTCGAGAAAATCAACCATTTGCAAAGGGAAATTGAAATGGCGAATCCGAGTAAATTGGAGTCTATGGGGATTTTGAGAGCTGAGAAGCCGAGTGAATATTTGGTCAGAAATTCACCTAAGTTTAGTGTGGAAAGGAGAGAAGGTGACACTCGGATTGAGATTTGCTGTGCGGCTAAGCCTGGATTGTTGTTGTCAACAGTGCACACTCTTGAAGCTTTGGGACTTGATATTCAGCAATGTGTCATTAGCTGCTTCAATGACTTCGCAATTCAAGCCTCTTGTTCCGAGGGAACGGAACGGAGACCGATAGAAGAAGTAAAACAAGCATTATTTGAAAATGCTGGATATGGAGGAAGATGTCTGTAG 981 46.18 MELNEHCLLDELQALRREINWELAMPTEINDLISTANGWNFDCSDASSFPFSLPIDHQDFGYLLCGEDDYSFPDGQFTAAPSTGDSMSYTTFETTPGGFGRCPVMEEEDEIPNLEVLGSCKMEPAYSPEIVPVFNAGGTCDFGQKIVSSASKKLQGKPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADSIDYVKELLEKINHLQREIEMANPSKLESMGILRAEKPSEYLVRNSPKFSVERREGDTRIEICCAAKPGLLLSTVHTLEALGLDIQQCVISCFNDFAIQASCSEGTERRPIEEVKQALFENAGYGGRCL 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10276379 10277887 - CmaCh01G014610.1 Cma01g01461 287154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01461 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 223 IPR036638 GO:0046983
Cma01g01461 326 SMART finulus 162 211 IPR011598 GO:0046983
Cma01g01461 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 205 IPR011598 GO:0046983
Cma01g01461 326 Gene3D - 149 221 IPR036638 GO:0046983
Cma01g01461 326 PANTHER - 2 326 - -
Cma01g01461 326 Coils Coil 195 215 - -
Cma01g01461 326 Pfam Helix-loop-helix DNA-binding domain 162 205 IPR011598 GO:0046983
Cma01g01461 326 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 326 - -
Cma01g01461 326 CDD ACT_UUR-ACR-like 255 315 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01461 Cma05g00563 CCT
Cma01g01461 Cma09g00606 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01461 Cma-Chr1:10276379 Cma05g00563 Cma-Chr5:2765253 1.64E-101 dispersed
Cma01g01461 Cma-Chr1:10276379 Cma09g00606 Cma-Chr9:2852285 4.45E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34340 PF00010 HLH 8.30E-09 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01461 - - cmax:111480299 657.521