Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01466 ATGGGGAGAGGCAAGATTGTAATTAGGAGGATCGATAATTCGACGAGCAGACAGGTGACTTTCTCGAAGCGAAGGAGTGGACTGCTGAAGAAGGCGAAAGAACTGGCGATCCTTTGTGACGCCGATGTTGGAGTCATCATCTTCTCCAGCACCAGCAAGCTTTATGAATACTCCAGCACCAGCATGAAAACACTAATAGAACGATATAACAAGACAAAAGAGGAGCACCATCAGCTTGGTTTCTCGACTTCAGAAGTCAAGTACTGGCAAAAGGAAGCAGCAATGTTACGGCAACAACTGCAGAGCTTACAAGAAAATCATCGGCAGATGATGGGTGAAGAGCTGACTGGTCTGAGCATCAAAGATCTGCAGAATCTAGAAAACCAACTGGAGATAAGTCTTCGTGGTGTCCGTATGAAGAAGGATCAAATCTTAATGGATGAGATACAAGAACTAAACAGAAAGGGAAACCTAATTCACCAAGGCAATATGGAACTTTATAAGAAGGTAAACCTAATTCGTCAAGAAAACCTGGAATTATACCAAAAGGTCTATGGAACAAAGGATGCCAATGGAGCAAGCAGTCTAACAAACGGCCTGGGTGTGGGAGAGGATGCAGGTATACCTATCAGCCTTCAACTCAGCCAACCACAACAACAAAACCGTGAGGCACCAGAAAGAGCAACAAAACTGGGGTACAGTTGTGAAAAAATGCATTAA 720 43.89 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSSTSMKTLIERYNKTKEEHHQLGFSTSEVKYWQKEAAMLRQQLQSLQENHRQMMGEELTGLSIKDLQNLENQLEISLRGVRMKKDQILMDEIQELNRKGNLIHQGNMELYKKVNLIRQENLELYQKVYGTKDANGASSLTNGLGVGEDAGIPISLQLSQPQQQNREAPERATKLGYSCEKMH 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10310670 10321893 - CmaCh01G014660.1 Cma01g01466 287159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01466 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cma01g01466 239 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma01g01466 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cma01g01466 239 MobiDBLite consensus disorder prediction 215 239 - -
Cma01g01466 239 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Cma01g01466 239 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Cma01g01466 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma01g01466 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma01g01466 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma01g01466 239 Coils Coil 86 113 - -
Cma01g01466 239 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Cma01g01466 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cma01g01466 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 231 - -
Cma01g01466 239 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 231 - -
Cma01g01466 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cma01g01466 239 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01466 Cma09g00600 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01466 Cma-Chr1:10310670 Cma04g00409 Cma-Chr4:2097635 2.24E-96 dispersed
Cma01g00242 Cma-Chr1:1103977 Cma01g01466 Cma-Chr1:10310670 2.07E-44 transposed
Cma03g00053 Cma-Chr3:480593 Cma01g01466 Cma-Chr1:10310670 4.95E-39 transposed
Cma01g01466 Cma-Chr1:10310670 Cma09g00600 Cma-Chr9:2804731 4.33E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34341 PF01486 K-box 4.50E-26 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01466 K09264 - csv:101203545 403.29