Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01467 ATGGAGGGTGAGCGCTTCAGTTATCGTTTACCTAATTTTGACGGACCGTGTACAACGATCGCCTACGTTCTGTTCGTTCGTTCCGATGGCAGTTGCATCCGAAGCGACCACAACGGCCGAGACATTCCGTCGACAAATATCGATCTGCATTCTGTTCATTGCGAGCGGAACCTAGAGAAATGTAAAATATGCGGCGATATGGTTCCTAAAAGACATGCGGAGGAACATTTCCTGAACACCCATGCTTCTGTTTCCTGTTCGCTATGTAGCGAGACCATGGAACGGGACATTTTAGCCATTCATAAAGGTGAAAATTGCCCTCAAAGGATTGTTACTTGTGAGTTTTGTGAGTTCCCATTGCCAGCAATAGATTTGGCTGAGCATCAGGAGGTATGTGGTAACCGGACTGAGCTTTGTCATCTGTGTCGCCGATATATAAGACTGCGAGAAAGATATAGTCATGAGAATAATTGTGAGAATGTTGCAGCAGCAGATCATATAGCAGAGTCTTCCAGGGATGTGGGGTCAGCACCACCAGAAAGAGAAGAAGCTAGAGGTCGAGGCGCTCAAAGAAGACAGCCGCAGGAGTTTTCTACCCGACGCCTTATATTCACTATCGCAATAACAGGTATTGCCGTTCTATTAGGATCCTTATTTTTCCAGAAAAAGGGCGAGAACAATGTGATCCACCCCGCCAACCAATCGCGCCACTTCCATACTTCTCCAAATTCTAATCTTCGGCGTCGATCGTCGAGCAATGCAATTCTCAATCCTAAAGAGAATAGGAAAAGTCATTGTACAGTATCGATCATCGGAATCCATTTGATACCTAAAATCGCCACAATCCGTTTTATTCTCAGTCGATCGTTGTTCACGATAGATCAGTATGCGCTATCAGTCTCCCTCATCACAAGAAACACTCCTTCTTTTCCGTTTTCTGTTCGTTCTTCCGACTCTTGTTTCTCAAGAAATTTCAGAATCGAAGGTCTCACAATGTCTTCCCGGGGAGTGCGATTGCAGATAAGAGATCATCATGTGGTCGTAGATAATGGAATACTGCAACTAACTTTATCAAAACCAGACGGAATTATCACTGGCATACATTATAATGGTGTTGACAATCTGCTTGAAGTTCTCAACCCTGAATCTAACAGAGGGATTAAGGGATCAAGTTTTAGGGTTATAGTGGAAAATGAGGAACAGGTTGAGCTTTCGTTTACAAGGATGTGGGATCCGTCCCTCGAGGGCAAGGTTGTTCCTTTGAATATCGACAAGAGGTTCATAGTACTACGTGGTTCCTCTGGATTCTACTCTTATGCTATTTATGAACACTTGAAGGATTGGCCTGATTTTGATATTGGTGAAACTAGGATCACTTTTAAACTCAGAAAAGATAAGTTTCAGTACATGGCTGTAGCTGACAACAGGCAGAGATTGATGCCCCTGCCCGATGATCGGTTATCAGGCAGATGCCAGACTTTGGGCTTCCCTGAAGCTGTCTTGCTTACCAATCCCAAGAACCCTGAACACAGGGATGAGGTGGATGACAAATACCAATACTCATGTGAAAATAAAGACTTAAAGGTCCATGGATGGATAAGCAACAACCCGCCCATCGGGTTCTGGCAAATTACACCGAGCGATGAATTTCGATCAGGCGGGCCACATAAGCAGAGTTTAACATCCCATGTGGGACCTACAACTCTTGCTATATTTCTTAGTACTCATTATGCGGGACAAGATTTGGTGCCAAAATTTAGAAATGGCGAGCCATGGAAGAAAGTTTTTGGGCCTGTTTTTCTTTATCTTAATTCCACTAAAGCTGGAGATGATCCCTTTTGGTTATGGGAGGATGCTAAAATACAGATGATGGCAGAAGTCCAAAGTTGGCCATACAGTTTCCCCGCCTCCGACAATTTCCCGAAACTGGATCAACGGGGTACCATTAGCGGTAGGCTTCTGGTTTTCGACAGGTATATGAGCCGAGACTATCTTCCAGCCAGTGGAGCGTTCGTCGGATTGTCTGCACCAGGAGAAGTAGGGTCATGGCAGAGAGAATGCAAGGGATATCAATTCTGGACTAGAGCGGATGATCGTGGCTATTTTATCATCAATCACGTTCACATTGGCCAATATAATCTATATGCATGGGTCCCTGGCTTCATTGGAGATTACCGTTGCGATGCCTTAATCAACATAAGCCAAGGATCTAGCATTGAACTTGGCAATCTTGTTTACGAACCTCCAAGAGATGGCCCGACACTATGGGAAATAGGCATTCCCGATCGCTCGGCATCGGAGTTCTACATTCCTGATCCTAATCCAATGCATATTAATAAGCTCTTTGTAAATCATCCTGAAAGGTTTCGACAGTATGGGTTGTGGGAGAGGTACGCTGAATTATACCCGGACGAGGATTTAGTATACACTGTTGGCACAAGTGATTATAGTAAAGATTGGTTCTTTGCTCAGGTCCCAAGGAAGACGAACAATAATTCACATCAAGGAACTACCTGGAAAATCGCATTCAAACTCGATCGAGTAGATCGCAAGAGTAGGTATATGCTACGAGTCGCAATCGCATCTGCAACTCTTGCTGAATTGCAGGTTCGGGTTAATGATCCGAGTTCAAAGCGACCTTTGTTTACGAGCGGGTTGATAGGGAGAGACAACTCAATTGCAAGACATGGAATTCATGGAATTTACTGGCTTTACAGCGTGGGCATAGCAGGCTTACACCTTGTTGAAGGAGATAACGCAATCTTCTTTACTCAGCCACGCTGCACCAGCCCTTTCCAAGGTATCATGTATGATTATATCCGTCTGGAAGGTCCTTCAACAAACTGA 2847 44.5 MEGERFSYRLPNFDGPCTTIAYVLFVRSDGSCIRSDHNGRDIPSTNIDLHSVHCERNLEKCKICGDMVPKRHAEEHFLNTHASVSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCRRYIRLRERYSHENNCENVAAADHIAESSRDVGSAPPEREEARGRGAQRRQPQEFSTRRLIFTIAITGIAVLLGSLFFQKKGENNVIHPANQSRHFHTSPNSNLRRRSSSNAILNPKENRKSHCTVSIIGIHLIPKIATIRFILSRSLFTIDQYALSVSLITRNTPSFPFSVRSSDSCFSRNFRIEGLTMSSRGVRLQIRDHHVVVDNGILQLTLSKPDGIITGIHYNGVDNLLEVLNPESNRGIKGSSFRVIVENEEQVELSFTRMWDPSLEGKVVPLNIDKRFIVLRGSSGFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRLMPLPDDRLSGRCQTLGFPEAVLLTNPKNPEHRDEVDDKYQYSCENKDLKVHGWISNNPPIGFWQITPSDEFRSGGPHKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRNGEPWKKVFGPVFLYLNSTKAGDDPFWLWEDAKIQMMAEVQSWPYSFPASDNFPKLDQRGTISGRLLVFDRYMSRDYLPASGAFVGLSAPGEVGSWQRECKGYQFWTRADDRGYFIINHVHIGQYNLYAWVPGFIGDYRCDALINISQGSSIELGNLVYEPPRDGPTLWEIGIPDRSASEFYIPDPNPMHINKLFVNHPERFRQYGLWERYAELYPDEDLVYTVGTSDYSKDWFFAQVPRKTNNNSHQGTTWKIAFKLDRVDRKSRYMLRVAIASATLAELQVRVNDPSSKRPLFTSGLIGRDNSIARHGIHGIYWLYSVGIAGLHLVEGDNAIFFTQPRCTSPFQGIMYDYIRLEGPSTN 948
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10326381 10334537 + CmaCh01G014670.1 Cma01g01467 287160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01467 948 Pfam Rhamnogalacturonate lyase family 340 514 IPR010325 -
Cma01g01467 948 CDD RGL4_M 645 744 IPR029413 -
Cma01g01467 948 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 328 947 - -
Cma01g01467 948 SUPERFAMILY Starch-binding domain-like 642 736 IPR013784 GO:0030246
Cma01g01467 948 SUPERFAMILY Galactose-binding domain-like 751 943 IPR008979 -
Cma01g01467 948 CDD RGL4_C 756 943 - -
Cma01g01467 948 Pfam Polysaccharide lyase family 4, domain III 754 942 IPR029411 -
Cma01g01467 948 CDD RGL4_N 345 612 - -
Cma01g01467 948 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 163 IPR013083 -
Cma01g01467 948 MobiDBLite consensus disorder prediction 169 194 - -
Cma01g01467 948 Pfam Polysaccharide lyase family 4, domain II 668 740 IPR029413 -
Cma01g01467 948 SUPERFAMILY Galactose mutarotase-like 343 608 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cma01g01467 948 Gene3D - 338 619 IPR014718 GO:0030246
Cma01g01467 948 Gene3D - 752 943 - -
Cma01g01467 948 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 328 947 - -
Cma01g01467 948 MobiDBLite consensus disorder prediction 175 190 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01467 Cma09g00598 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01467 Cma-Chr1:10326381 Cma12g00212 Cma-Chr12:1038153 0 dispersed
Cma01g01467 Cma-Chr1:10326381 Cma01g01469 Cma-Chr1:10336662 0 proximal
Cma09g00598 Cma-Chr9:2799326 Cma01g01467 Cma-Chr1:10326381 4.64E-127 transposed
Cma01g01467 Cma-Chr1:10326381 Cma09g00597 Cma-Chr9:2782929 1.52E-180 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01467 K18195 - csv:101203947 1158.28