Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g01467 | ATGGAGGGTGAGCGCTTCAGTTATCGTTTACCTAATTTTGACGGACCGTGTACAACGATCGCCTACGTTCTGTTCGTTCGTTCCGATGGCAGTTGCATCCGAAGCGACCACAACGGCCGAGACATTCCGTCGACAAATATCGATCTGCATTCTGTTCATTGCGAGCGGAACCTAGAGAAATGTAAAATATGCGGCGATATGGTTCCTAAAAGACATGCGGAGGAACATTTCCTGAACACCCATGCTTCTGTTTCCTGTTCGCTATGTAGCGAGACCATGGAACGGGACATTTTAGCCATTCATAAAGGTGAAAATTGCCCTCAAAGGATTGTTACTTGTGAGTTTTGTGAGTTCCCATTGCCAGCAATAGATTTGGCTGAGCATCAGGAGGTATGTGGTAACCGGACTGAGCTTTGTCATCTGTGTCGCCGATATATAAGACTGCGAGAAAGATATAGTCATGAGAATAATTGTGAGAATGTTGCAGCAGCAGATCATATAGCAGAGTCTTCCAGGGATGTGGGGTCAGCACCACCAGAAAGAGAAGAAGCTAGAGGTCGAGGCGCTCAAAGAAGACAGCCGCAGGAGTTTTCTACCCGACGCCTTATATTCACTATCGCAATAACAGGTATTGCCGTTCTATTAGGATCCTTATTTTTCCAGAAAAAGGGCGAGAACAATGTGATCCACCCCGCCAACCAATCGCGCCACTTCCATACTTCTCCAAATTCTAATCTTCGGCGTCGATCGTCGAGCAATGCAATTCTCAATCCTAAAGAGAATAGGAAAAGTCATTGTACAGTATCGATCATCGGAATCCATTTGATACCTAAAATCGCCACAATCCGTTTTATTCTCAGTCGATCGTTGTTCACGATAGATCAGTATGCGCTATCAGTCTCCCTCATCACAAGAAACACTCCTTCTTTTCCGTTTTCTGTTCGTTCTTCCGACTCTTGTTTCTCAAGAAATTTCAGAATCGAAGGTCTCACAATGTCTTCCCGGGGAGTGCGATTGCAGATAAGAGATCATCATGTGGTCGTAGATAATGGAATACTGCAACTAACTTTATCAAAACCAGACGGAATTATCACTGGCATACATTATAATGGTGTTGACAATCTGCTTGAAGTTCTCAACCCTGAATCTAACAGAGGGATTAAGGGATCAAGTTTTAGGGTTATAGTGGAAAATGAGGAACAGGTTGAGCTTTCGTTTACAAGGATGTGGGATCCGTCCCTCGAGGGCAAGGTTGTTCCTTTGAATATCGACAAGAGGTTCATAGTACTACGTGGTTCCTCTGGATTCTACTCTTATGCTATTTATGAACACTTGAAGGATTGGCCTGATTTTGATATTGGTGAAACTAGGATCACTTTTAAACTCAGAAAAGATAAGTTTCAGTACATGGCTGTAGCTGACAACAGGCAGAGATTGATGCCCCTGCCCGATGATCGGTTATCAGGCAGATGCCAGACTTTGGGCTTCCCTGAAGCTGTCTTGCTTACCAATCCCAAGAACCCTGAACACAGGGATGAGGTGGATGACAAATACCAATACTCATGTGAAAATAAAGACTTAAAGGTCCATGGATGGATAAGCAACAACCCGCCCATCGGGTTCTGGCAAATTACACCGAGCGATGAATTTCGATCAGGCGGGCCACATAAGCAGAGTTTAACATCCCATGTGGGACCTACAACTCTTGCTATATTTCTTAGTACTCATTATGCGGGACAAGATTTGGTGCCAAAATTTAGAAATGGCGAGCCATGGAAGAAAGTTTTTGGGCCTGTTTTTCTTTATCTTAATTCCACTAAAGCTGGAGATGATCCCTTTTGGTTATGGGAGGATGCTAAAATACAGATGATGGCAGAAGTCCAAAGTTGGCCATACAGTTTCCCCGCCTCCGACAATTTCCCGAAACTGGATCAACGGGGTACCATTAGCGGTAGGCTTCTGGTTTTCGACAGGTATATGAGCCGAGACTATCTTCCAGCCAGTGGAGCGTTCGTCGGATTGTCTGCACCAGGAGAAGTAGGGTCATGGCAGAGAGAATGCAAGGGATATCAATTCTGGACTAGAGCGGATGATCGTGGCTATTTTATCATCAATCACGTTCACATTGGCCAATATAATCTATATGCATGGGTCCCTGGCTTCATTGGAGATTACCGTTGCGATGCCTTAATCAACATAAGCCAAGGATCTAGCATTGAACTTGGCAATCTTGTTTACGAACCTCCAAGAGATGGCCCGACACTATGGGAAATAGGCATTCCCGATCGCTCGGCATCGGAGTTCTACATTCCTGATCCTAATCCAATGCATATTAATAAGCTCTTTGTAAATCATCCTGAAAGGTTTCGACAGTATGGGTTGTGGGAGAGGTACGCTGAATTATACCCGGACGAGGATTTAGTATACACTGTTGGCACAAGTGATTATAGTAAAGATTGGTTCTTTGCTCAGGTCCCAAGGAAGACGAACAATAATTCACATCAAGGAACTACCTGGAAAATCGCATTCAAACTCGATCGAGTAGATCGCAAGAGTAGGTATATGCTACGAGTCGCAATCGCATCTGCAACTCTTGCTGAATTGCAGGTTCGGGTTAATGATCCGAGTTCAAAGCGACCTTTGTTTACGAGCGGGTTGATAGGGAGAGACAACTCAATTGCAAGACATGGAATTCATGGAATTTACTGGCTTTACAGCGTGGGCATAGCAGGCTTACACCTTGTTGAAGGAGATAACGCAATCTTCTTTACTCAGCCACGCTGCACCAGCCCTTTCCAAGGTATCATGTATGATTATATCCGTCTGGAAGGTCCTTCAACAAACTGA | 2847 | 44.5 | MEGERFSYRLPNFDGPCTTIAYVLFVRSDGSCIRSDHNGRDIPSTNIDLHSVHCERNLEKCKICGDMVPKRHAEEHFLNTHASVSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCRRYIRLRERYSHENNCENVAAADHIAESSRDVGSAPPEREEARGRGAQRRQPQEFSTRRLIFTIAITGIAVLLGSLFFQKKGENNVIHPANQSRHFHTSPNSNLRRRSSSNAILNPKENRKSHCTVSIIGIHLIPKIATIRFILSRSLFTIDQYALSVSLITRNTPSFPFSVRSSDSCFSRNFRIEGLTMSSRGVRLQIRDHHVVVDNGILQLTLSKPDGIITGIHYNGVDNLLEVLNPESNRGIKGSSFRVIVENEEQVELSFTRMWDPSLEGKVVPLNIDKRFIVLRGSSGFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRLMPLPDDRLSGRCQTLGFPEAVLLTNPKNPEHRDEVDDKYQYSCENKDLKVHGWISNNPPIGFWQITPSDEFRSGGPHKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRNGEPWKKVFGPVFLYLNSTKAGDDPFWLWEDAKIQMMAEVQSWPYSFPASDNFPKLDQRGTISGRLLVFDRYMSRDYLPASGAFVGLSAPGEVGSWQRECKGYQFWTRADDRGYFIINHVHIGQYNLYAWVPGFIGDYRCDALINISQGSSIELGNLVYEPPRDGPTLWEIGIPDRSASEFYIPDPNPMHINKLFVNHPERFRQYGLWERYAELYPDEDLVYTVGTSDYSKDWFFAQVPRKTNNNSHQGTTWKIAFKLDRVDRKSRYMLRVAIASATLAELQVRVNDPSSKRPLFTSGLIGRDNSIARHGIHGIYWLYSVGIAGLHLVEGDNAIFFTQPRCTSPFQGIMYDYIRLEGPSTN | 948 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 10326381 | 10334537 | + | CmaCh01G014670.1 | Cma01g01467 | 287160 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g01467 | 948 | Pfam | Rhamnogalacturonate lyase family | 340 | 514 | IPR010325 | - | |
Cma01g01467 | 948 | CDD | RGL4_M | 645 | 744 | IPR029413 | - | |
Cma01g01467 | 948 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 328 | 947 | - | - | |
Cma01g01467 | 948 | SUPERFAMILY | Starch-binding domain-like | 642 | 736 | IPR013784 | GO:0030246 | |
Cma01g01467 | 948 | SUPERFAMILY | Galactose-binding domain-like | 751 | 943 | IPR008979 | - | |
Cma01g01467 | 948 | CDD | RGL4_C | 756 | 943 | - | - | |
Cma01g01467 | 948 | Pfam | Polysaccharide lyase family 4, domain III | 754 | 942 | IPR029411 | - | |
Cma01g01467 | 948 | CDD | RGL4_N | 345 | 612 | - | - | |
Cma01g01467 | 948 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 103 | 163 | IPR013083 | - | |
Cma01g01467 | 948 | MobiDBLite | consensus disorder prediction | 169 | 194 | - | - | |
Cma01g01467 | 948 | Pfam | Polysaccharide lyase family 4, domain II | 668 | 740 | IPR029413 | - | |
Cma01g01467 | 948 | SUPERFAMILY | Galactose mutarotase-like | 343 | 608 | IPR011013 | GO:0003824|GO:0005975|GO:0030246 | |
Cma01g01467 | 948 | Gene3D | - | 338 | 619 | IPR014718 | GO:0030246 | |
Cma01g01467 | 948 | Gene3D | - | 752 | 943 | - | - | |
Cma01g01467 | 948 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 328 | 947 | - | - | |
Cma01g01467 | 948 | MobiDBLite | consensus disorder prediction | 175 | 190 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g01467 | Cma09g00598 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01467 | Cma-Chr1:10326381 | Cma12g00212 | Cma-Chr12:1038153 | 0 | dispersed | |
Cma01g01467 | Cma-Chr1:10326381 | Cma01g01469 | Cma-Chr1:10336662 | 0 | proximal | |
Cma09g00598 | Cma-Chr9:2799326 | Cma01g01467 | Cma-Chr1:10326381 | 4.64E-127 | transposed | |
Cma01g01467 | Cma-Chr1:10326381 | Cma09g00597 | Cma-Chr9:2782929 | 1.52E-180 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g01467 | K18195 | - | csv:101203947 | 1158.28 |