Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01469 ATGTCAACAGATTTGAGGCAAATGAAAAAAGGTGCATTTTCCCTCTCAATTTTGTCCGCCTCCCTCAAAATATTTTGGCTCTTTTCTTCCCTTTTCTTTTACCTTTACGGGCCCTTCATCCCCACGACGACAAAAGACCCCGTCGTCTCGACGACGCCTGACACCGATGGACACAGCCCCAATGGACACGGCCCCCCTAATGGACACAACCCCAATGTATCGTTGTCTCTGTTGCAACTCCACATCCAAGAACAATATGTTGTGATGGAGAATGAAATAATTGCAGTGACGATATCGAATCCGATGGGATTTGTCACCGGAATACAATACCATGGGATTGAAAACTTGCTTGATGTGACCAATCCTGAAGATGATAGAGGATATTGGGATGTTGTTTGGAACACCGCAGGAGCAAAAGGAACCAAAGGCATGTTTGATCGAATTGAAGCGACAGATTTCAAGGTAATCGTACAAAATGACGAACAGATAGAACTCTCATTCAGCAGAACTTACAATTCATCCTCCGGAGACGGCGTAGTTCCTTTGAATGTCGACAAAAGGTTCGTGATACTACGAAATTCATCAGGATTCTATTCGTACGCCATTTACGAACACTTGAAAGAATGGCCAGCGTTTAACATCGACAACACCAGAATCGCATTCAAGCCGCGAAAAGACAAGTTTCGGTACATGGTAGTAGCAGATGAGAGACAGAGATTCATGCCTTTACCAGACGATCGGAAGCCACCGCGAGGGGTAGCCCTAGAGTATCCAGAGGCCGTCCTCCTTGTGGATCCTATAGAACCCGAGTTCAAGGGAGAGGTTGATGACAAGTACCAATACGGGTGCGAAAGCAAAGACACTCGGGTTCACGGGTGGATATCCAACGACCCGCCCATTGGCATTTGGCAAATCACAGCCAGCGAGGAGTATCGCTCCGGTGGGCCCCTCAAACAAGTTCTCACCTCCCATGTGGGTCCCGCCTCCCTTACGGTTTTCCATAGCGCTCATTACGCAGGAGCGGCTATGGTGATACGGTTTGGAAGTAACGAGGCATGGAAGAAGGTGTACGGCCCTGTCTTTATACATATCAATTCCTTGCCTGAAAAAGAAGATCCACTCGGACTTTGGCAAAATGCTAAACAACAGATGGCTGCTGAAGTTCAAAGCTGGCCTTACAATTTCCCTGCGTCTAAGGATTTTATCAAAGCAGACCAACGAGGCACTGTCAGCGGCAGATTGATGATCCGTGAAAGATATGTGAGTAATGAATCCATACCTGCAAGTGGTGCATATGTGGGGCTGGCACTTCCTGGGGAACTTGGCTCCTGGCAAACAGAAAGCAAGGGCTACCAATTCTGGAGCAGAGCAGATGAGAATGGACATTTCACTTTGGAAAATGTTCTCAGTGGAAATTATAGTCTTAATGGATGGGTCTATAATTTTATCAGCGAGTACCAATATGATGCTTTCATCACTGTAACCCCAGGAATCGCTATCGATGTGGGTGAACTTGTTTTTGAGCCTCCAAGAGATGGTCCAACATTGTGGGAAATAGGCATTCCAGATCGTACTGCTGCAGAATTCTATGTACCAGATCCTAATCCCAAGTTTATTAATAAACTTTTTGTCAATCATTCAGATAAGTTTAGGCAATATGGATTATGGGAAAGATACGCAGAATTATATCCTAAGGAGGACCTAGTTTATACGGTTGACCAAAGTGACTACAAAAAGGATTGGTTCTTTGCACAAGTTAACAGGAAGATAGACGACAACAACACATATGTAGGAACTACTTGGAAAATTGAGTTCAAAATTGACAGTCCAGATACACATGGAACATATAAGCTGCGTCTTGCATTGGCCACTGCACATGCTGCAGAATTACAAGTTCGAGTGAATGATGCACAAACAGTTACCCCGTTATTCACAACTGGAGTAATTGGAAAGGACAACACTATAGCTAGACATGGAATTCACGGTCTGTACCGGTTTTACACCGTTGATATTCCGGGCAGTGAGCTTGTGGCGGGCAACAATACAATTTTTCTTACACAAACAAATGACCAGGGTCCTTTTGTTGGGATTATAAACCAGAAGCATCAACAAACTCACTTTCAATCCGTAGCTACAATTCGTTGCTCTTATCTTGTTTTTCGAAGAAGAATGGCAACGTTTGAACTCTACCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAACGGTACTCTTAGTCCGGAGCTTGCTATTCAGGTTCTTGTGCAGTTCGATAAGTCCATGACCGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGACTATAAAGGGACATCTGCATACCTATCGGTTCTGCGACAACGTTTGGACGTTCATTTTGCAGGATGCAACATTTAAGAACGAGGATTCCCAGGAGACTGTCGGAAGAATTAAAATAGTAGCATGCGACTCAAAGTTACTCACACAATAA 2490 44.66 MSTDLRQMKKGAFSLSILSASLKIFWLFSSLFFYLYGPFIPTTTKDPVVSTTPDTDGHSPNGHGPPNGHNPNVSLSLLQLHIQEQYVVMENEIIAVTISNPMGFVTGIQYHGIENLLDVTNPEDDRGYWDVVWNTAGAKGTKGMFDRIEATDFKVIVQNDEQIELSFSRTYNSSSGDGVVPLNVDKRFVILRNSSGFYSYAIYEHLKEWPAFNIDNTRIAFKPRKDKFRYMVVADERQRFMPLPDDRKPPRGVALEYPEAVLLVDPIEPEFKGEVDDKYQYGCESKDTRVHGWISNDPPIGIWQITASEEYRSGGPLKQVLTSHVGPASLTVFHSAHYAGAAMVIRFGSNEAWKKVYGPVFIHINSLPEKEDPLGLWQNAKQQMAAEVQSWPYNFPASKDFIKADQRGTVSGRLMIRERYVSNESIPASGAYVGLALPGELGSWQTESKGYQFWSRADENGHFTLENVLSGNYSLNGWVYNFISEYQYDAFITVTPGIAIDVGELVFEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKFINKLFVNHSDKFRQYGLWERYAELYPKEDLVYTVDQSDYKKDWFFAQVNRKIDDNNTYVGTTWKIEFKIDSPDTHGTYKLRLALATAHAAELQVRVNDAQTVTPLFTTGVIGKDNTIARHGIHGLYRFYTVDIPGSELVAGNNTIFLTQTNDQGPFVGIINQKHQQTHFQSVATIRCSYLVFRRRMATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10336662 10346026 + CmaCh01G014690.1 Cma01g01469 287162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01469 829 CDD TFIIA_gamma_N 727 772 IPR015872 GO:0005672|GO:0006367
Cma01g01469 829 MobiDBLite consensus disorder prediction 47 70 - -
Cma01g01469 829 Gene3D - 402 502 - -
Cma01g01469 829 Gene3D - 513 696 - -
Cma01g01469 829 Pfam Rhamnogalacturonate lyase family 70 275 IPR010325 -
Cma01g01469 829 SUPERFAMILY Transcription factor IIA (TFIIA), beta-barrel domain 775 825 IPR009088 GO:0005672|GO:0006367
Cma01g01469 829 Pfam Polysaccharide lyase family 4, domain II 429 500 IPR029413 -
Cma01g01469 829 Pfam Transcription initiation factor IIA, gamma subunit, helical domain 727 772 IPR015872 GO:0005672|GO:0006367
Cma01g01469 829 Pfam Transcription initiation factor IIA, gamma subunit 783 824 IPR015871 GO:0005672|GO:0006367
Cma01g01469 829 Gene3D - 778 828 IPR009088 GO:0005672|GO:0006367
Cma01g01469 829 SUPERFAMILY Starch-binding domain-like 403 503 IPR013784 GO:0030246
Cma01g01469 829 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 70 699 - -
Cma01g01469 829 SUPERFAMILY Transcription factor IIA (TFIIA), alpha-helical domain 727 777 - -
Cma01g01469 829 CDD RGL4_M 406 505 IPR029413 -
Cma01g01469 829 Pfam Polysaccharide lyase family 4, domain III 515 697 IPR029411 -
Cma01g01469 829 PANTHER RHAMNOGALACTURONATE LYASE B-RELATED 70 699 - -
Cma01g01469 829 SUPERFAMILY Galactose-binding domain-like 512 697 IPR008979 -
Cma01g01469 829 Gene3D - 80 354 IPR014718 GO:0030246
Cma01g01469 829 CDD RGL4_N 86 366 - -
Cma01g01469 829 CDD TFIIA_gamma_C 780 825 IPR015871 GO:0005672|GO:0006367
Cma01g01469 829 Gene3D - 726 777 IPR009083 GO:0005672|GO:0006367
Cma01g01469 829 CDD RGL4_C 517 698 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01469 Cma09g00597 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01469 Cma-Chr1:10336662 Cma12g00212 Cma-Chr12:1038153 0 dispersed
Cma01g01467 Cma-Chr1:10326381 Cma01g01469 Cma-Chr1:10336662 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01469 K18195 - csv:101203789 1039.64