Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01470 ATGCTGCTCTATTGCCCCAGTTTAAAGATTGTCCAGAAAAACAGGAAAAACAAACAAAAAAAAGTCTTGAGACAAAACCAGAGTGAATTTTATGATGAACAATTGATTCCTATTTGCCTTGAGAAGTACATAGCTTCTTACTTATACGCCCAAATATACCCGTTAGTTTTGTTGCCTCTCTCAACGTCTCAGTTTGTGGTTGAACTCACCGATTTTGAGATCAAGACACGCTTCAGAGCTCCGCTAGAAATAGCTAATGAAGACTGGGTCTCGATAGACCTTTGCCGCCAGCGCTTCGAAGCAAGCAGTTGCCGCGAAGAGCACAGCAATATCATTATTGCTCTCACCGACGGCAACGGCGACACCGAATCCCTCTCTCAGTTATCCGATATTTCAATATTGAAGTACATTTTGTGCTTCAGACTTATTATGGAAGTTACTGCGATGGAGGAACACAACAACATGCGTTGTGATGATAGAACAAACAAAGAAGCTTCTCAACTAACTGCTTTGTTGAAGGAAATGAAGGATGGATTGGACACAGTCACAAATAAAGTCCAGGCTTTAACTGCCAAGGTAAAATCAAACGAGCTTCCTACATCAGATGGGATAAGCTATCTTGATGCCAAATATTTATTACTTCTTAACTATTGCTCTTCACTTGTATACTATTTGCTTCGCAAAGCCAAGGGGTTCTCAATTGAGGGCCATCCTGTTGTCAGGAGTCTTGTAGAGATAAGGTTATTTCTCGAGAAGGTTCGTTCCTTTTCCCCTACTCTTTTCTGCTTGCTTACCTGCATGGGACTTATAAGCCCTGCCTTTTGGTTGACGCAGATTCGACCTATTGATAAGAAGCTCGAGTATCAGATTCAGAAGCTGACAAGAGTTTCTGTTGTTACAAAAGAGGATGCATTCGTGGATGAAAAGGAATCAGCTACACCTCAGGCTACGGATGATCGGTTAAAATATCGTCCAAACCCTGACATGCTTGTCAGTAAATCAGAAGGGATTGCTGAGGATGGAGATGGTATATATCGTCCACCAAGGTTTGCCCCTACTACTATGGATGAAGATAAGAACTCTAGGAAGGAGAGAACTTCCTCGAGGAAGGATTTAGAGACACTCCGAAGAGCTCGACAGAGTGATTATATGAGGGAGCTTATGGATGACATGGCTGGGAAACCTGAAGAGATTAAAGAAAGTGTTGGACTCGAAAATAGAGAAGTTGCTAGATATGTAGCTAAAATGGACGAACGTGATCGAAGAGAAGAGGAGCTTTTCACTCGTGCGCCGCTTACAAAGATGGAGAAAAAGAGAGAAAAATACCTAAAGAAGTCGAGATATGGGATGGGTGGCGTAACCGATAGTTTCTTTGACGAGGTAAAATCGATGCCCTTGGGAGGTGCTGATGACGAGCAACCGACCAGTTTTGGTAGTAGTAGAGGCGGAATGAGAAAATATAAGAAGCGCAAGGGCAGGCATTGA 1485 42.69 MLLYCPSLKIVQKNRKNKQKKVLRQNQSEFYDEQLIPICLEKYIASYLYAQIYPLVLLPLSTSQFVVELTDFEIKTRFRAPLEIANEDWVSIDLCRQRFEASSCREEHSNIIIALTDGNGDTESLSQLSDISILKYILCFRLIMEVTAMEEHNNMRCDDRTNKEASQLTALLKEMKDGLDTVTNKVQALTAKVKSNELPTSDGISYLDAKYLLLLNYCSSLVYYLLRKAKGFSIEGHPVVRSLVEIRLFLEKVRSFSPTLFCLLTCMGLISPAFWLTQIRPIDKKLEYQIQKLTRVSVVTKEDAFVDEKESATPQATDDRLKYRPNPDMLVSKSEGIAEDGDGIYRPPRFAPTTMDEDKNSRKERTSSRKDLETLRRARQSDYMRELMDDMAGKPEEIKESVGLENREVARYVAKMDERDRREEELFTRAPLTKMEKKREKYLKKSRYGMGGVTDSFFDEVKSMPLGGADDEQPTSFGSSRGGMRKYKKRKGRH 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10346072 10351860 - CmaCh01G014700.1 Cma01g01470 287163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01470 494 PANTHER LEUCINE ZIPPER FACTOR-LIKE 149 494 - -
Cma01g01470 494 Coils Coil 172 192 - -
Cma01g01470 494 MobiDBLite consensus disorder prediction 352 380 - -
Cma01g01470 494 PANTHER SOMETHING ABOUT SILENCING PROTEIN 10-RELATED 149 494 IPR007146 -
Cma01g01470 494 MobiDBLite consensus disorder prediction 307 326 - -
Cma01g01470 494 MobiDBLite consensus disorder prediction 461 494 - -
Cma01g01470 494 MobiDBLite consensus disorder prediction 307 380 - -
Cma01g01470 494 Pfam Sas10/Utp3/C1D family 172 252 IPR007146 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01470 K14765 NGDN, LCP5; U3 small nucleolar ribonucleoprotein protein LCP5 - csv:101204682 495.352
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01470 Cma-Chr1:10346072 Cma08g00186 Cma-Chr8:1046843 3.47E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g534 . . . . . . . . . . Cma01g01470 . . . . . . . . . . . . . . . . . . . . Cone4ag1287 Cone7ag0866 . . Lsi04g02286 Csa03g04502 . . . . . . . . . . Sed05g1553 Cmo01g01526 . . . . . . Cpe02g00482 Bhi09g02514 Tan01g3865 Cmetu04g2990 . Hepe01g2178 Mch11g0717 . Cla11g01435 Cam11g1489 . . Clacu11g1651 Cmu11g1468 Cre11g1886 . . . Cme04g00229
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007584 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 6 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01470 Cma_Chr01 FPKM 5.010777 6.83556 8.651282 8.804694 10.022622 8.094772 11.505613 11.317518 12.623531 11.843628