Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01473 ATGCCGCACAGAACGACTTATTTCTTCCCCAGGCAATTTCCGGATCGCGGATTTGACTCAGCGTCAACCTCCAAACAGATTTTGGATCACGAGAAGAAAATCAACAAGGACACTTTAAGTACCGAAAGTGACGCGAAACCGACCCCGCGGCCTGCTCGCGACTTTAGTGTCACGAAGAGTTCGGCTGTATCGGATCTTTTCACGGGGGACAAGTCTCAAAGCAAGAAGAAACTGCCTGCTCTTTACGATTGGTTGGTGAACAAGAAAGCAACGCGATCAGCAACCGCTCACGTGAAAACTTGGCTTTCCAATTGCGACGAGGACCGCGAGCTTTTGCTTCCTCCACCTACCTCGGAACCAGATCATGATACAAAGAATGTTGAGGATCGGAGTGTTGACCGGCGCTTTGACCGGGAAGTTTCACTGCCTAGATTATCAAGCGGGAGTAGCTATGCAGGGAGTTTGTTTTCAGGCACGGGAACGGGGACTGTGGATGGGAACCTTTCCAGCGATGTTAAGGATTCATCGGTGTCGAAGATATTCTCCACGCGGACTGCGAGACCGGAAGAGATTGTGGATGGAGATGGTGAGGAAAGCCTAGCGCAAAGAACGAAAGAGAGTTATTACCTGCAACTCGCTTTGGCTGCAACGCTTCGTTCTCATGCTAGTCTCGCTGGCGATCCCGTGCTTATGGAGGAAGGCAGGGTGGAGATTACGGACGCTGAAACTGTTTCTTATCGACTATGGGTAAGTGGTTGCCTGTCTTACTCCGACAAAATTTCCGATGGTTTCTACAATATTTTGGGTATGAACCCCTATCTCTGGGTTATGTGCAATGATTTTGAGGAAGGTAGACGGCTACCACCTCTGATGTCACTTAAAACCATTGAACCGAGTGAGACGTCAATGGAGGTGGTTCTTGTGGATAGACGTGGGGACTCTCGACTGAAGGAGCTTGAAGAGAAAGCACAAGAACTATATTGTGCTTCAGAGAACACCTTAGTGTTGGTGGAAAAACTAGGAAAACTTGTTGCGATCTACATGGGGGGCACTTTCCCGGTGGAGCAAGGGGGTTTGCACCTCCATTGGAAAGTGGTGAGCAAAAGATTGAGGGAATTTCAGCAATGCATTGTGCTACCAATCGGTAGTCTATCTATGGGATTATGCAGGCACCGTGCAATACTTTTTAAGAAATTGGCAGATTATATAGGTTTGCCATGTCGGATAGCTAAAGGTTGTATGTACTGTGTTGCTGATCATCGATCCTCTTGCCTTGTCAAAATTGAAGATGACAAGAAATCGTTGAGGGAATATGTAGTTGATTTAGTGGGGGAACCAGGAAATATACATGGTCCAGATTCCTCAATTAATGGAGGGCTCCAATCTTCAATGCCTTCACCACTTCACATTTCTCATTTAAAAGAGTTCCAAGAACCTTACGTGGAAAGTTGTTTAAGCCGGCAAATTGTTGGGTCAAAGCAAACCTGTGGTTCTCCTGATAATCCTCTACATTCAGGCCTTGGAGAGCGCCGGATGAGAGGGGGAAGCACGTTATATAAAAATTCAGGGACTGGAACTGATAAATTGGTTGATCAAGCTGTCGGTATGAGATCATCTCAGCTGTGTTTGGAAACTAAAGTGAGCGAGGAGTGTGTGCTTCAGAGTCATATATTGGCACCCACTGACGCTGATGCCTCTAAGAACTTGGGTTCTGTTGCTGGTGCATCTTTACATGAAAACGCAGTTGTCATTGAAGAAATATACAGAAAAGAGGAAGTTGTGGTGGGAATTTCACTCGATGAATCTAGCATTGATCCGTCCAAATTAAGCTTGTCAACTCAAACTGATTCAAAAGAGGTTGAGAGTAGGTCTCGAAATTGTTCAGCATCAACACATCCAAAATATCTGATACTTGAACCATCTCTTGCAATGGATTGGCTGGAAATTTCATGGGATGAATTACATATAAAGGAGCGTGTTGGAGCTGGCTCATTTGGAACAGTGCACCGTGCTGAATGGCATGGATCGGATGTTGCTGTCAAGGTTTTAAGCGTGCAGGATTTCCAAGACGATCAGTTGAAAGAGTTTCTAAGAGAGGTTGCAATAATGAAGCGGGTCCGCCATCCGAATGTGGTACTCTTCATGGGTGCAGTTACTAAGAGACCTCATCTTTCAATAGTGACTGAATATCTGCCTAGGGGTAGTCTATACCGCCTAATTCACAGGCCATCCTCTGGTGAATTGATGGATCAAAGGAAACGATTGCGAATGGCGTTGGATGTGGCCAAGGGAATCAACTACCTACATTGTCTCAATCCTCCCATAGTACACTGGGATCTTAAATCCCCCAATTTGTTGGTTGACAAAAATTGGACGGTCAAGGTTTGCGACTTTGGGTTGTCCAGATTCAAAGCCAACACTTTCATATCATCGAAATCTGTAGCTGGAACTCCTGAGTGGATGGCTCCAGAATTCCTTCGTGGAGAGCCTTCAAATGAGAAGACTGATGTCTACAGTTTTGGAGTGATCCTCTGGGAACTAGTCACCATGCAACAACCGTGGAGTGGGCTTGGCCCGGCTCAGGTTGTGGGAGCTGTCGCTTTCCAGAATAGAAAGCTTTCCATACCACCAAACACTTCCCCGTTGGTGTCTTCCCTTATTGAATCTTGCTGGGCAGATGATCCTGTTCAGCGCCCATCATTTGCAAGTATAGTCGAGTCCCTGAAGAAATTGCTCAAATGTCCCCAGCAGTTGATAGTACTGGGAGGAACGTGA 2775 46.23 MPHRTTYFFPRQFPDRGFDSASTSKQILDHEKKINKDTLSTESDAKPTPRPARDFSVTKSSAVSDLFTGDKSQSKKKLPALYDWLVNKKATRSATAHVKTWLSNCDEDRELLLPPPTSEPDHDTKNVEDRSVDRRFDREVSLPRLSSGSSYAGSLFSGTGTGTVDGNLSSDVKDSSVSKIFSTRTARPEEIVDGDGEESLAQRTKESYYLQLALAATLRSHASLAGDPVLMEEGRVEITDAETVSYRLWVSGCLSYSDKISDGFYNILGMNPYLWVMCNDFEEGRRLPPLMSLKTIEPSETSMEVVLVDRRGDSRLKELEEKAQELYCASENTLVLVEKLGKLVAIYMGGTFPVEQGGLHLHWKVVSKRLREFQQCIVLPIGSLSMGLCRHRAILFKKLADYIGLPCRIAKGCMYCVADHRSSCLVKIEDDKKSLREYVVDLVGEPGNIHGPDSSINGGLQSSMPSPLHISHLKEFQEPYVESCLSRQIVGSKQTCGSPDNPLHSGLGERRMRGGSTLYKNSGTGTDKLVDQAVGMRSSQLCLETKVSEECVLQSHILAPTDADASKNLGSVAGASLHENAVVIEEIYRKEEVVVGISLDESSIDPSKLSLSTQTDSKEVESRSRNCSASTHPKYLILEPSLAMDWLEISWDELHIKERVGAGSFGTVHRAEWHGSDVAVKVLSVQDFQDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLYRLIHRPSSGELMDQRKRLRMALDVAKGINYLHCLNPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFISSKSVAGTPEWMAPEFLRGEPSNEKTDVYSFGVILWELVTMQQPWSGLGPAQVVGAVAFQNRKLSIPPNTSPLVSSLIESCWADDPVQRPSFASIVESLKKLLKCPQQLIVLGGT 924
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10384629 10392767 + CmaCh01G014730.1 Cma01g01473 287166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01473 924 Gene3D Phosphorylase Kinase; domain 1 647 731 - -
Cma01g01473 924 ProSitePatterns Protein kinases ATP-binding region signature. 660 681 IPR017441 GO:0005524
Cma01g01473 924 Pfam Ethylene-responsive protein kinase Le-CTR1 241 449 - -
Cma01g01473 924 MobiDBLite consensus disorder prediction 19 59 - -
Cma01g01473 924 PANTHER SERINE/THREONINE-PROTEIN KINASE CTR1-LIKE ISOFORM X1 108 922 - -
Cma01g01473 924 MobiDBLite consensus disorder prediction 25 40 - -
Cma01g01473 924 MobiDBLite consensus disorder prediction 109 129 - -
Cma01g01473 924 MobiDBLite consensus disorder prediction 495 523 - -
Cma01g01473 924 Pfam Protein tyrosine and serine/threonine kinase 654 908 IPR001245 GO:0004672|GO:0006468
Cma01g01473 924 CDD STKc_MAP3K-like 660 908 - -
Cma01g01473 924 ProSiteProfiles Protein kinase domain profile. 654 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01473 924 SUPERFAMILY Protein kinase-like (PK-like) 625 907 IPR011009 -
Cma01g01473 924 PRINTS Tyrosine kinase catalytic domain signature 728 741 IPR001245 GO:0004672|GO:0006468
Cma01g01473 924 PRINTS Tyrosine kinase catalytic domain signature 769 787 IPR001245 GO:0004672|GO:0006468
Cma01g01473 924 PRINTS Tyrosine kinase catalytic domain signature 835 857 IPR001245 GO:0004672|GO:0006468
Cma01g01473 924 PRINTS Tyrosine kinase catalytic domain signature 879 901 IPR001245 GO:0004672|GO:0006468
Cma01g01473 924 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 108 922 - -
Cma01g01473 924 Gene3D Transferase(Phosphotransferase) domain 1 733 918 - -
Cma01g01473 924 SMART serkin_6 654 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01473 924 ProSitePatterns Serine/Threonine protein kinases active-site signature. 775 787 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01473 Cma09g00596 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01473 Cma-Chr1:10384629 Cma06g00445 Cma-Chr6:2054179 0 dispersed
Cma01g01473 Cma-Chr1:10384629 Cma09g00596 Cma-Chr9:2765119 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68292 PF07714 PK_Tyr_Ser-Thr 1.10E-63 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01473 - - csv:101204522 1644.79