Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01475 ATGCACGGACGGCCGCGCAAGCCTCAGAAACCGGAGGAAGAAGAGGCTTCGGCGGCGGAAGCCGCCAAGCTTCGTCCTCTGCAATCTCAATTGCTCGAAAATCACCACCAAAAGAACTATGATAAGGAAGCCCTAGAGGTTAGTGCTAAGGTGCTGGAAATGAATCCGGATCTGTATACGGCTTGGAACTATAGGAAACTTGCGGTCGAACACTACCTGAAGGAATCTCCATCAGATACCGAGTCGATCAAAGCGATCCTCGATGAGGAACTCAGAGTAGCTGAAAGTGCACTGCGTCAGAACGTCAAGTCCTACGGCGCGTGGTATCATCGAAAATGGATCTTGAGCCAGGGGCATTCATCCACCGATCTTGAGTTGCGTCTTCTTGGAAAATTTCAAAAGCTCGACGCTAGGAATTTTCACGCATGGAACTACAGAAGATTTGTGGCAGAGTTAACGAACATATCCGAGGAAAAAGAGTTGAAGTATACAACAGATATGATAGACACAAATTTCAGCAATTATTCAGCATGGCATAATCGCAGTGCGCTTCTTGCTAAACTGCTGAACAAAAAGGCTGAAAGTTATTTCCCAGCGGAAAAGGTGTTAAATGAGGAGTATGAGCTCGTGCACCAAGCTATTTTCACTGATCCAGATGATCAAAGTGGTTGGTTTTATCATCTTTGGCTTCTGGACCAAACGATAAAATCAAATGCTCCAAGTCTTGTTTCCTCTTGGCCACCTCATGGTTACAGAGTGGCGTTATCAAGAAATAGAAGTCTGGATGATCAAACCCTATCTCCATCTAGAAGCTTCCATTCTGATTCAGAAACGTTGGCTCTCATTCTTTACTTCGATCAGCCTGTTCAAGGTGTCGACTCATCTTCAGTGAGTGTTAAATCTACAGCTCATTTAAGAGGAGATCTTATTTGGAAACCACTCTCAAAATGTAGCCATGATGCTGCCAAAGCTTGGGTTAGTCATCTTAGTTTTCCTCAAGGAGAGATGAATTCTTCTGAATCTTACTCTGTGGAAGTCAGTCTTGGAAATTCTCAGAAAATAACATCAGCAAGTGGTTTTCATCATGTGAAACCAACTTGTTTTTCTTTTGGAGTGTCTGTGCATTTAGGAGAAACACCTATTGAAGAATGTGGTAATGAAGGGATCTGGTGGAAGGATGAAAACTTTACTAGTTGCGGCATTAGTCCTCAAACTTTACCATTTGCTTCTTCCGATAATCTAACCATTGAGAATAATTATGCACCTTCTAGTTCTGAATGGTGTGCTGAGATTATAAGCAATGAAATAGCTCTTTTCCGAGAATTATTGTCCGAGACTGAATGTAAAATTGGTAAGCTCACTCTTGCAAGATTTCTGATGGCTCATGTTGCAACATCTCCACATGCCAATAAAGTGGCCCAACTTGAGGAAGTGCTTGAACTTTACCTGGACCTGATGAAGTTGGACCCAACACATTTTCATTACTACAAGGATGAACACAGCTCAGTTTTATTGCAGAAGGTGACATCGACTACGGAGTCTTTGTTTAGACACTGCTATTGCTACAAAGACCAGACCTCACCGTATTTAGGCACTACTACCTGTGTAAGGCTCAATAATTTATCAATTTCACGGATTGGATCTGTTGAAAAATTACTATGGGTTCAAGTGCTGGACCTCAGCCATAACGAACTCCGTTCAACTGAAGGATTGGAGGCCTTGCAGCTTCTCTCTTGCTTGAGTTTGAGCAACAATAAAATCGGTAGTTTTACCGCATTGGAGTCTCTAAGAACGTTGAAGTCCTTGAAAGTTTTGGATGTCTCGTGCAACGAGATTGGTTCGCATTCGATCGACACCACAAGATATCTCTTCTCATCTCCCCTGTCTCATTCCGAAGAAAAAGAAAATGATCTGAGCAGTGATAAAATGGTCACTGATAGCCCCGACCTGGCAAGTTACTGGGAAGCTTATTTTCTATTCAAAGATCTGAACTTGACTCAATTAGATATTGAAGGAAACATGATATCTAGTGAGAGGTTTCAGGCATTTCTGGTTAAGGTTCTTCCCAAACTCCACTGGCTTGATGGCAAACAAGTACAATAG 2103 42.46 MHGRPRKPQKPEEEEASAAEAAKLRPLQSQLLENHHQKNYDKEALEVSAKVLEMNPDLYTAWNYRKLAVEHYLKESPSDTESIKAILDEELRVAESALRQNVKSYGAWYHRKWILSQGHSSTDLELRLLGKFQKLDARNFHAWNYRRFVAELTNISEEKELKYTTDMIDTNFSNYSAWHNRSALLAKLLNKKAESYFPAEKVLNEEYELVHQAIFTDPDDQSGWFYHLWLLDQTIKSNAPSLVSSWPPHGYRVALSRNRSLDDQTLSPSRSFHSDSETLALILYFDQPVQGVDSSSVSVKSTAHLRGDLIWKPLSKCSHDAAKAWVSHLSFPQGEMNSSESYSVEVSLGNSQKITSASGFHHVKPTCFSFGVSVHLGETPIEECGNEGIWWKDENFTSCGISPQTLPFASSDNLTIENNYAPSSSEWCAEIISNEIALFRELLSETECKIGKLTLARFLMAHVATSPHANKVAQLEEVLELYLDLMKLDPTHFHYYKDEHSSVLLQKVTSTTESLFRHCYCYKDQTSPYLGTTTCVRLNNLSISRIGSVEKLLWVQVLDLSHNELRSTEGLEALQLLSCLSLSNNKIGSFTALESLRTLKSLKVLDVSCNEIGSHSIDTTRYLFSSPLSHSEEKENDLSSDKMVTDSPDLASYWEAYFLFKDLNLTQLDIEGNMISSERFQAFLVKVLPKLHWLDGKQVQ 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10396532 10401041 - CmaCh01G014750.1 Cma01g01475 287168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01475 700 Pfam Protein prenyltransferase alpha subunit repeat 125 149 IPR002088 GO:0008318|GO:0018342
Cma01g01475 700 Pfam Protein prenyltransferase alpha subunit repeat 203 233 IPR002088 GO:0008318|GO:0018342
Cma01g01475 700 Pfam Protein prenyltransferase alpha subunit repeat 87 117 IPR002088 GO:0008318|GO:0018342
Cma01g01475 700 Pfam Protein prenyltransferase alpha subunit repeat 158 187 IPR002088 GO:0008318|GO:0018342
Cma01g01475 700 Pfam Protein prenyltransferase alpha subunit repeat 42 71 IPR002088 GO:0008318|GO:0018342
Cma01g01475 700 MobiDBLite consensus disorder prediction 1 20 - -
Cma01g01475 700 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 86 120 IPR002088 GO:0008318|GO:0018342
Cma01g01475 700 SUPERFAMILY Protein prenylyltransferase 12 500 - -
Cma01g01475 700 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 40 74 IPR002088 GO:0008318|GO:0018342
Cma01g01475 700 PANTHER - 1 605 - -
Cma01g01475 700 ProSiteProfiles Leucine-rich repeat profile. 576 597 IPR001611 GO:0005515
Cma01g01475 700 MobiDBLite consensus disorder prediction 1 28 - -
Cma01g01475 700 SUPERFAMILY L domain-like 502 619 - -
Cma01g01475 700 PANTHER PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT 1 605 - -
Cma01g01475 700 ProSiteProfiles Leucine-rich repeat profile. 554 575 IPR001611 GO:0005515
Cma01g01475 700 Gene3D Ribonuclease Inhibitor 523 700 IPR032675 -
Cma01g01475 700 Gene3D Protein prenylyltransferase 1 248 - -
Cma01g01475 700 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 121 155 IPR002088 GO:0008318|GO:0018342
Cma01g01475 700 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 156 190 IPR002088 GO:0008318|GO:0018342
Cma01g01475 700 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 202 236 IPR002088 GO:0008318|GO:0018342
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01475 K14050 RABGGTA; geranylgeranyl transferase type-2 subunit alpha [EC:2.5.1.60] - csv:101216457 1101.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01475 Cma-Chr1:10396532 Cma14g01470 Cma-Chr14:11196407 4.40E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g527 . Blo12g00733 . . . . . . . . Cma01g01475 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01530 . . . . . . . . . . . . . . Cla11g01428 Cam11g1484 Cec11g1516 Cco11g1511 Clacu11g1647 Cmu11g1464 Cre11g1882 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005438 1 5 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01475 Cma_Chr01 FPKM 9.776153 10.764348 11.4876 10.677396 8.343518 7.787203 7.541408 10.973754 10.815153 11.552725