Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01476 ATGGTAGCTCTCATTAATGGCTTCTCCCAACTGCAAGGATGCGTGCGAATCTTCTTCACCACAACAAAAGCCTCTGCCATTCTCCAGTCTTCCATAAATTCAACTCCTCCTCCTCCAAACTTCTCTCACTTCTACGCCCAATTTCATCAGAAAACCGCTCGAAAATTCCGATTTCTCTCTATTCTTCGTCAGGCGGCGAGATTCATGGACGGCAGCGGAAACGACCTAATTTCCGAAGTGAAATTTTCGTCCGTGGTACCGGCGAAGGCGACCGGCGAGAATAAGGTCCATGAACTTTCGGCGATCGATCTTGCGATGAAACTTCATTACATTCGCGGCGTTTATTTCTTCAGGCCGAGCGAAGAGGTGAGAAATTTGACGATTTATGACCTAAAGAAACCTATGTTTCCGTTGCTGGAGATATACTACGTCGTTTCTGGAAGGATTCGGAGGAGGATCGAAGATCGCGATCGGCCGTTTATCAAGTGTAATGATAGCGGAGTGAGAATCGTTGAAGTGGAGTGCGAAAAAACGATCGACGAGTGGCTTTCAATCGATGACGACAAGATTTCGCACCGCGATGGAGATTTGGTTTACAGTCGTGCGATCGGGCCAGATCTTGGATTCTCCCCTCTCGTGTTCATCCAGCTGACTCGGTTCAGGTGTGGCGGACTCTCCGTCGGCCTCAGTTGGGCTCACGTCCTCGGCGATATTTTCTCCGCCTCCACCTTCATCAACGCATGGGGTCACGTCATGAAAAACCGCCCGGTCGAACGACTCCGCCCACTGCCGGCAACTGCGGCGGACCTCATTCGGCCGTCCGGCTCAACTGGACGATCTACATCGCCGATCAAGCGGCTGGACTCGACTGGCGACCTTTGGATCGCTTCAAACGACTGCAAAATGGCTAAGCGATCGTTTCGAATCATGGAAGAGCAACTGGTACGAATATTGAGCGTCGTCGACCGGAATCGATCGGCGAACTACTCGAGTTTTGAAGCTATTGCTGCGATTTTCTGGAAATGTCTGTCGAAAATACGGCTTGAGGACTCGGATTCAAAGACGATATCGATCTATTCGACTAAATGTCCTGATAGAGAGGGTCAGATTCCGAGGAATGGAATGGTGATGAGCGCCGTCGAGGCCGATTTTCCGGTCGCCGGAGCGGAGGAAGGTGCGTTGGCGGAGCTGATTGTGAAGAAGAAAATTGACGAGGACGAAGAAATCAAGGAATTGGTGGAGAAAGAAAGGGAGGAATCTGACTTCATAGCGTACGGCGCAAGATTGACGTTCGTTGATTTGGAAGAAGCGAATCTCTACGGCTTGGAATTGGAAGGACAGAGGCCAGTTCATGTGAATTATGAAATTGGGGGAGTCGGTGAAAACGGCGTCGTTTTGGTGCTTCCAGGGCCGCCACGTTGCGACGGTACACCCGGCGGTGGCCGGACGGTAACGGTGATCTTGCCGGAGAAACAACTGCCGGACCTGATCGATGAACTGCAGAAGCAATGGGCGATTGTTTAA 1524 51.12 MVALINGFSQLQGCVRIFFTTTKASAILQSSINSTPPPPNFSHFYAQFHQKTARKFRFLSILRQAARFMDGSGNDLISEVKFSSVVPAKATGENKVHELSAIDLAMKLHYIRGVYFFRPSEEVRNLTIYDLKKPMFPLLEIYYVVSGRIRRRIEDRDRPFIKCNDSGVRIVEVECEKTIDEWLSIDDDKISHRDGDLVYSRAIGPDLGFSPLVFIQLTRFRCGGLSVGLSWAHVLGDIFSASTFINAWGHVMKNRPVERLRPLPATAADLIRPSGSTGRSTSPIKRLDSTGDLWIASNDCKMAKRSFRIMEEQLVRILSVVDRNRSANYSSFEAIAAIFWKCLSKIRLEDSDSKTISIYSTKCPDREGQIPRNGMVMSAVEADFPVAGAEEGALAELIVKKKIDEDEEIKELVEKEREESDFIAYGARLTFVDLEEANLYGLELEGQRPVHVNYEIGGVGENGVVLVLPGPPRCDGTPGGGRTVTVILPEKQLPDLIDELQKQWAIV 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10405178 10407747 + CmaCh01G014760.1 Cma01g01476 287169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01476 507 Gene3D - 297 498 IPR023213 -
Cma01g01476 507 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 76 504 - -
Cma01g01476 507 PANTHER PROTEIN ECERIFERUM 2 76 504 - -
Cma01g01476 507 Pfam Transferase family 84 355 - -
Cma01g01476 507 Gene3D - 77 286 IPR023213 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01476 - - - cmo:103503654 597.045
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01476 Cma-Chr1:10405178 Cma08g00997 Cma-Chr8:6243787 1.01E-85 dispersed
Cma01g01476 Cma-Chr1:10405178 Cma17g00903 Cma-Chr17:6827140 5.12E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g418 . . . Bda03g00059 . . Bma04g00058 . . . Cma01g01476 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe04g00046 . . . Cmo01g01531 . . . . . . Cpe02g00477 . . . . . . . . . . . . . . . . . .
Vvi18g523 . . . Bda03g00453 . Bpe04g00416 Bma04g00429 . . . Cma01g01476 . . . . . . . . . . . . . . . . . . . . . Cone7ag0861 . . Lsi04g02282 Csa03g04496 Chy04g00203 . . . Bda11g00803 . . . . . Sed13g1533 Cmo01g01531 . . . . . . Cpe02g00477 Bhi09g02503 Tan01g3855 Cmetu04g0115 . Hepe01g2172 Mch11g0712 . . . . . . . . . . . Cme04g00234
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010250 2 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01476 Cma_Chr01 FPKM 7.780404 9.435168 10.680447 10.774498 21.02005 20.717052 19.484907 9.965852 9.85233 8.978642