Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01477 ATGACGAAAAGATCGGCAGACTTAGAGGAGGAGGGGCGGAGTAAAGAAGCGGTGAGTATGGTGGAAATGTTGCGTAGAATGGCCTTGATGTCGAAGAAGAAGAAGAGTGGAACGGTGCCGGTTTATTTGAATGTTTATGATCTAACGCCGATCAATGGCTACGCGTATTGGTTCGGTCTAGGGGTTTACCATTCCGGTGTTCAAGTTCATGGAGTTGAATATGCATTTGGAGCTCATGACCATGCAACTTCAGGGATATTTGAGGTAGAACCAAGGCAATGTCCTGGTTTTACATTTAGGAAATCGATTTGCATCGGAAGAACGAATCTTGGTCCGAAAGATGTCCGCTCATTCATGGAGAAACTAGCTGAAGAGTACTCTGGGAACACTTATCATCTCATAACAAAAAATTGCAACCACTTCTGCAACGACGCATGTGTGAAGTTGGTCGGAAAACCAATCCCTAGCTGGGTCAACCGACTTGCTCGACTCGGTCTTTTCTGCAACTGTGTTCTTCCAGCGAGTTTGAACGAATCAAAAGTTCGGCAAGTAAGATCGGGAGAGAAGTTCAACGAAGGTATAAAGAAGAAACTGAAAATCCAGTCAAATGGGTGTAATAATGCTTCATCTTCTACTAACCCTTCGAAACCTTCAACTACAACCGTCAAAGTAAATAGACAGAAACGATGCCTCCCAGCATCGTCGACGGTGATAAATTCTTCGACATCGGCACCTCTGACTCTGAAGCTGTAA 753 44.49 MTKRSADLEEEGRSKEAVSMVEMLRRMALMSKKKKSGTVPVYLNVYDLTPINGYAYWFGLGVYHSGVQVHGVEYAFGAHDHATSGIFEVEPRQCPGFTFRKSICIGRTNLGPKDVRSFMEKLAEEYSGNTYHLITKNCNHFCNDACVKLVGKPIPSWVNRLARLGLFCNCVLPASLNESKVRQVRSGEKFNEGIKKKLKIQSNGCNNASSSTNPSKPSTTTVKVNRQKRCLPASSTVINSSTSAPLTLKL 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10410792 10412969 + CmaCh01G014770.1 Cma01g01477 287170

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01477 250 Pfam PPPDE putative peptidase domain 40 174 IPR008580 GO:0008233
Cma01g01477 250 PANTHER OS02G0788133 PROTEIN 27 229 - -
Cma01g01477 250 PANTHER DESUMOYLATING ISOPEPTIDASE 27 229 IPR008580 GO:0008233
Cma01g01477 250 Gene3D PPPDE domains 34 191 IPR042266 -
Cma01g01477 250 ProSiteProfiles PPPDE domain profile. 39 176 IPR008580 GO:0008233
Cma01g01477 250 SMART DUF862_2a 39 177 IPR008580 GO:0008233
Cma01g01477 250 MobiDBLite consensus disorder prediction 202 224 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01477 K22763 DESI2, PPPDE1; deubiquitinase DESI2 [EC:3.4.19.12] - csv:101215693 394.045
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01477 Cma09g00581 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01477 Cma-Chr1:10410792 Cma17g00890 Cma-Chr17:6770554 3.57E-82 dispersed
Cma01g01477 Cma-Chr1:10410792 Cma11g00560 Cma-Chr11:2708186 1.71E-68 wgd
Cma01g01477 Cma-Chr1:10410792 Cma12g00358 Cma-Chr12:1811495 8.91E-103 wgd
Cma01g01477 Cma-Chr1:10410792 Cma09g00423 Cma-Chr9:1840056 4.35E-135 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g527 . . Bda01g00759 . . . . . . . Cma01g01477 . Car09g00374 . Sed09g0886 . . Bhi04g00039 Tan02g2754 Cmetu02g2111 . Hepe10g0224 . Lcy13g1819 . . . . . . . . . . . . . . . . Blo18g00013 . . . . Bma01g01268 . Sed05g1728 Cmo01g01533 Cmo09g00429 . . . . . . Bhi09g02978 Tan01g3588 Cmetu07g0071 . Hepe01g1982 Mch11g0518 . . . . . . . . . . Chy03g01091 Cme07g00105
Vvi18g473 . Blo12g00717 . Bda03g00469 Bpe02g00129 Bpe04g00431 Bma04g00444 Bma01g02597 . . Cma01g01477 Cma09g00581 Car01g01239 . . Cpe06g00444 . . . . . . . . . . . . . . . Cone4ag1314 Cone7ag1257 . . Lsi04g02263 Csa03g04473 Chy04g00228 . . . Bda11g00784 . . . . . . Cmo01g01533 Cmo09g00568 . . . Car09g00512 . Cpe02g00353 Bhi09g02475 . . . . Mch11g0692 . Cla11g01407 Cam11g1464 Cec11g1492 Cco11g1488 Clacu11g1625 Cmu11g1442 Cre11g1861 . . . Cme04g00254
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001862 3 2 2 1 3 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 6 2 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01477 Cma_Chr01 FPKM 2.750958 4.437761 20.396885 22.59128 11.220117 13.091286 11.467019 13.457042 13.681318 13.917268