Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01478 ATGTCCGCCGTCTTCTCTTCCTGCTTCCGCCCCTCCGACGATCGCCGCCGCCGCTCTCCGCCGCCAATTCCCAGCTCCCCGAATCTCACCACCTGCATTTACCGCACCAATTCCGGTCTCTTTTCTCTCTCTTGGTCGCAATCCCTCTTCTCTCACTCCCTTCTCCTCCACTTCCACCAAAACCCAAATGCCTTCGATTCTTCAATTTCTTTTCACCTTCTCATTAAACCTCTAATTCCATGGAAGAAACACGGCTCCGAGAAGCTCTCCGACGGTATCCACGTCCAATGGGACCTACGGCGTGCTCGTTTCTCCGCCTCGCCGGAACCCCACTCCGGATTCTTCATCGCCGTCGTAGTCGACGGCGAAACGATTCTTCTCGTCGGCGACATGATCAAAGAAGCCTACGCGAAGACAAGAACAGCTAAGCTCCAAAACCCACAAGCCCTAATCCTGAAAAGGGAACACGTGATTGCGCACAATATCTACACCACGCAGGCGAAATTCGGCGGCCAAATCCGAGAAATCGAAATTGACGGTGGCTTCTACGACGGCGAATCAGGGCTGTCGTTCAGCGTCGACGGGAAATGTGTTCTGCAAATCAAGCGGCTGAACTGGAAATTCAGAGGAAACGAAAGAATCGAAGTGGCCGGAGTTCCGGTGGAGGTGTATTGGGATGTGTACAATTGGGTTTCCGATATGGGGAAAAAAAACAGAGGAAATGCAGTGTTCATGTTCAGATTCGAAGAGGAAGATGAACAGATGAACAGACAGCAGAATTGGAACCTAGGATTGAACCAATTGGTCGGTTCTATTTCGGTATCAATGTCGTCGGTCGGATCATCCACCGGAGCCAGTTCATCCGTCATGGAATGGGCTACCGGTGAAGACAGCGATCAAATCGGAGCTCCGGTAGGATTTTCTTTACTGATTTACGCATGGAGAAGGTAA 951 51.31 MSAVFSSCFRPSDDRRRRSPPPIPSSPNLTTCIYRTNSGLFSLSWSQSLFSHSLLLHFHQNPNAFDSSISFHLLIKPLIPWKKHGSEKLSDGIHVQWDLRRARFSASPEPHSGFFIAVVVDGETILLVGDMIKEAYAKTRTAKLQNPQALILKREHVIAHNIYTTQAKFGGQIREIEIDGGFYDGESGLSFSVDGKCVLQIKRLNWKFRGNERIEVAGVPVEVYWDVYNWVSDMGKKNRGNAVFMFRFEEEDEQMNRQQNWNLGLNQLVGSISVSMSSVGSSTGASSSVMEWATGEDSDQIGAPVGFSLLIYAWRR 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10414482 10415432 - CmaCh01G014780.1 Cma01g01478 287171

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01478 316 MobiDBLite consensus disorder prediction 1 24 - -
Cma01g01478 316 PANTHER EXPRESSED PROTEIN 269 315 IPR008586 -
Cma01g01478 316 PANTHER EXPRESSED PROTEIN 3 257 IPR008586 -
Cma01g01478 316 PANTHER OS08G0422401 PROTEIN 269 315 - -
Cma01g01478 316 PANTHER OS08G0422401 PROTEIN 3 257 - -
Cma01g01478 316 Pfam Plant protein of unknown function (DUF868) 26 315 IPR008586 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01478 - - - cmax:111480782 545.814
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01478 Cma-Chr1:10414482 Cma12g01109 Cma-Chr12:8783925 2.08E-48 dispersed
Cma05g01186 Cma-Chr5:9194481 Cma01g01478 Cma-Chr1:10414482 1.76E-42 dispersed
Cma01g01478 Cma-Chr1:10414482 Cma12g00357 Cma-Chr12:1807948 1.77E-80 wgd
Cma01g01478 Cma-Chr1:10414482 Cma09g00425 Cma-Chr9:1843433 2.95E-150 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g528 . . Bda01g00758 . . . . . . . Cma01g01478 . . . Sed11g1153 . . Bhi04g00038 Tan02g2753 Cmetu03g1994 . Hepe10g0225 . Lcy13g1818 . . . . . . . Cone10ag0690 . . . . . . Cme03g01587 . Blo18g00014 Bda01g01007 . . . . . Sed05g1726 Cmo01g01534 . . . . . . . Bhi09g02976 Tan01g3589 Cmetu07g2171 . Hepe01g1983 Mch11g0519 . . . . . . . . . . . Cme07g00104
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002448 3 2 1 2 1 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01478 Cma_Chr01 FPKM 0.271293 0.154134 0.193895 0.091735 1.101705 2.139819 1.566215 0.30035 0.758435 0.468529