Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01479 ATGGCCAGACCTCAAAGGCAATATCGTGGCGTAAGACAAAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGTCATCCTTCGTTGAAGACGAGGATTTGGCTTGGAACATTTGAAACGGCGGAGGATGCAGCGAGGGCTTATGATGAAGCGGCGAGATTAATGTGTGGACCAAACGCAAGAACGAATTTCCCGTACAATCCGAACACGATTCAGTCGTCGAATTCCAAGATTTTGTCGGCCAATTTGACTGCGAAATTGCATAGATGTTATATGGCTTCTTTGCAGATTAGTAACCAGGAGTTTAAAAGAGAACTTCCGCCGCCGTTTGCGACGGCGTCTTATGCCGATGCGGCGAGATCGATGGTGGAGGAGAATCGACCCACGGCGGCCGAGGCGGCGGAGCAAGAGGAACAGAAATTGTTGGAAGATGATCACATTGAGCAAATGATCGAGGAGCTTCTTTATTATGGATCCATGGAGTTTTGTTTGTGA 492 48.37 MARPQRQYRGVRQRHWGSWVSEIRHPSLKTRIWLGTFETAEDAARAYDEAARLMCGPNARTNFPYNPNTIQSSNSKILSANLTAKLHRCYMASLQISNQEFKRELPPPFATASYADAARSMVEENRPTAAEAAEQEEQKLLEDDHIEQMIEELLYYGSMEFCL 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10416824 10417624 - CmaCh01G014790.1 Cma01g01479 287172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01479 163 CDD AP2 7 66 IPR001471 GO:0003700|GO:0006355
Cma01g01479 163 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Cma01g01479 163 PANTHER ETHYLENE RESPONSE FACTOR 1 162 - -
Cma01g01479 163 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Cma01g01479 163 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Cma01g01479 163 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Cma01g01479 163 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Cma01g01479 163 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Cma01g01479 163 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Cma01g01479 163 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 162 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01479 Cma09g00461 CCT
Cma01g01479 Cma09g00461 ECH
Cma01g01479 Cma05g00357 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00172 Cma-Chr1:766805 Cma01g01479 Cma-Chr1:10416824 8.44E-49 dispersed
Cma01g01479 Cma-Chr1:10416824 Cma05g00358 Cma-Chr5:1604135 3.45E-62 dispersed
Cma01g01502 Cma-Chr1:10548202 Cma01g01479 Cma-Chr1:10416824 1.91E-30 dispersed
Cma01g01479 Cma-Chr1:10416824 Cma12g00356 Cma-Chr12:1805054 9.83E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34342 PF00847 AP2 2.30E-12 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01479 - - csv:101216179 224.557