Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g01479 | ATGGCCAGACCTCAAAGGCAATATCGTGGCGTAAGACAAAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGTCATCCTTCGTTGAAGACGAGGATTTGGCTTGGAACATTTGAAACGGCGGAGGATGCAGCGAGGGCTTATGATGAAGCGGCGAGATTAATGTGTGGACCAAACGCAAGAACGAATTTCCCGTACAATCCGAACACGATTCAGTCGTCGAATTCCAAGATTTTGTCGGCCAATTTGACTGCGAAATTGCATAGATGTTATATGGCTTCTTTGCAGATTAGTAACCAGGAGTTTAAAAGAGAACTTCCGCCGCCGTTTGCGACGGCGTCTTATGCCGATGCGGCGAGATCGATGGTGGAGGAGAATCGACCCACGGCGGCCGAGGCGGCGGAGCAAGAGGAACAGAAATTGTTGGAAGATGATCACATTGAGCAAATGATCGAGGAGCTTCTTTATTATGGATCCATGGAGTTTTGTTTGTGA | 492 | 48.37 | MARPQRQYRGVRQRHWGSWVSEIRHPSLKTRIWLGTFETAEDAARAYDEAARLMCGPNARTNFPYNPNTIQSSNSKILSANLTAKLHRCYMASLQISNQEFKRELPPPFATASYADAARSMVEENRPTAAEAAEQEEQKLLEDDHIEQMIEELLYYGSMEFCL | 163 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 10416824 | 10417624 | - | CmaCh01G014790.1 | Cma01g01479 | 287172 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g01479 | 163 | CDD | AP2 | 7 | 66 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01479 | 163 | SMART | rav1_2 | 7 | 70 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01479 | 163 | PANTHER | ETHYLENE RESPONSE FACTOR | 1 | 162 | - | - | |
Cma01g01479 | 163 | Pfam | AP2 domain | 7 | 56 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01479 | 163 | Gene3D | AP2/ERF domain | 6 | 65 | IPR036955 | GO:0003700|GO:0006355 | |
Cma01g01479 | 163 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 64 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01479 | 163 | SUPERFAMILY | DNA-binding domain | 7 | 66 | IPR016177 | GO:0003677 | |
Cma01g01479 | 163 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01479 | 163 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01479 | 163 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 1 | 162 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g01479 | Cma09g00461 | CCT | |
Cma01g01479 | Cma09g00461 | ECH | |
Cma01g01479 | Cma05g00357 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00172 | Cma-Chr1:766805 | Cma01g01479 | Cma-Chr1:10416824 | 8.44E-49 | dispersed | |
Cma01g01479 | Cma-Chr1:10416824 | Cma05g00358 | Cma-Chr5:1604135 | 3.45E-62 | dispersed | |
Cma01g01502 | Cma-Chr1:10548202 | Cma01g01479 | Cma-Chr1:10416824 | 1.91E-30 | dispersed | |
Cma01g01479 | Cma-Chr1:10416824 | Cma12g00356 | Cma-Chr12:1805054 | 9.83E-59 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34342 | PF00847 | AP2 | 2.30E-12 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g01479 | - | - | csv:101216179 | 224.557 |