Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01481 ATGATGGTGAACGACGACTGGCTTACGGCGGCCATGGCCGACGATGGAGTGGTGGTCGAGCTGTTGGTGCGGTTGAAGCAATCGCAGGCTGTGTCGCCTTCCAAATCTCCACTCCCGGTGACGGTGCCGTTCACTTGGGGGATTAGGCAGCTGAGGTCTAGAACGGCGACGACGGTTGGTAGATGTGGCGATGGTGTCTTGGTGAGGAACAATAAGGATGTTGACTCAACCAGATGGAGTCCTACGACGCCGCTTTCGTGGAGCGGTGGAGGTTCGCCTTCTGCTACGCTTGACGGTTATGAGGAGTCTAGCCGTCCTGCTACACTCTCGCACGCTGTTTCCAGATTTAAGGGTGCTGCTGCAAATGAATCCGGGGCTGGCACTGCAACAAAGAGGTTAAGACGAAAGAAGACATTTGCTGAACTTAAAGAAGAGGAGAGCGTGCTTTTGAATGAGAAAATTCATCTAAAAAAGGAACTTGCCAATCTAAGAGCTACCTTCGAAGAACAAAGAGCCAAGAATTTGAGTTTGAAGAAAATGAAGGTGGATTTGAACATGAAATACGCAGAAAAATTCAATACAAACTCCAAGATGATGATGCTGCAAGAGGACTCTTCATCCACACTAACCCATCAAAGGGAAAGCTCTAACATTGAAGCAATTCCTCCAACATTGCTGCCACTCACCGGGGCAGGTTCGGGGAGGTTCGAGGCTCAATCACAGAAGAAAAGCAAATCATCGACCGAAGACGATTGTGTCTTTTTCTTACCGGATTTGAATATGACACCCTCAGAGGATTGA 801 48.81 MMVNDDWLTAAMADDGVVVELLVRLKQSQAVSPSKSPLPVTVPFTWGIRQLRSRTATTVGRCGDGVLVRNNKDVDSTRWSPTTPLSWSGGGSPSATLDGYEESSRPATLSHAVSRFKGAAANESGAGTATKRLRRKKTFAELKEEESVLLNEKIHLKKELANLRATFEEQRAKNLSLKKMKVDLNMKYAEKFNTNSKMMMLQEDSSSTLTHQRESSNIEAIPPTLLPLTGAGSGRFEAQSQKKSKSSTEDDCVFFLPDLNMTPSED 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10426014 10429568 + CmaCh01G014810.1 Cma01g01481 287174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01481 266 MobiDBLite consensus disorder prediction 223 249 - -
Cma01g01481 266 PANTHER OS02G0182700 PROTEIN 2 266 - -
Cma01g01481 266 Coils Coil 153 173 - -
Cma01g01481 266 MobiDBLite consensus disorder prediction 74 102 - -
Cma01g01481 266 PANTHER OS02G0182700 PROTEIN 2 266 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01481 - - - bhj:120085676 384.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01481 Cma-Chr1:10426014 Cma08g00598 Cma-Chr8:3397007 4.79E-23 dispersed
Cma01g01481 Cma-Chr1:10426014 Cma12g00352 Cma-Chr12:1788625 2.04E-67 wgd
Cma01g01481 Cma-Chr1:10426014 Cma09g00426 Cma-Chr9:1846409 2.80E-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g536 . . . . . . . . . . Cma01g01481 . . . Sed11g1158 Cpe07g00309 . Bhi04g00031 Tan02g2746 Cmetu03g1252 . . . Lcy13g1812 . . . . . . . . . . . . . . . . . . Bda13g01248 . . . . Sed05g1724 Cmo01g01537 . . . . . . . Bhi09g02971 Tan01g3593 Cmetu07g0019 . . . . . . . . . . . . . . Cme07g00098
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001358 2 4 2 1 1 2 4 2 2 2 2 2 3 2 1 4 2 4 4 2 2 2 2 4 1 3 2 6 2 1 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01481 Cma_Chr01 FPKM 19.231756 20.828144 3.17352 4.210368 13.478601 14.841848 13.280481 2.847587 2.659567 2.782086