Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01482 ATGGAGAAGGCCGATGATCACTGTTTATCGAAGCTTCAACTCACCGAGCGTTCTGATGCTCGTCCTTCTGTGCTTCGGCTCCGTGAAATACTTGCGGCTTGCGCCAAGTCAATTGAAAACGGAGACACCCGTCAATCTGAAGCCATGGTATCTGAGCTGGTGAATTGCCTTGATTCTATTTCAGAGGCTGCTGAAACAGAATTGGACAATGGAGATTCAGAGAGCCATGTCTTTGAAGTCCTCAATGAGATTTATCAATTTATATCTTCTCCTTTATTAGATCAGGGAACTATTGACACTCTTTCATTTGATCTCCCAAAGGCAGTTTCCAAGTTTGTAGGGGTAGACGGATGTCTGGAGATCGTTGATAATATTATTGATAGGTTCGTTACGATGTGTAGTCCGCGGGATATGCTGTCGATTCTTTGCGAGGCTTTAGATTTCCAGATGACCAAGGGAACCAATTCCATTGCCCCTTTTTTAAGCGGGCTCTCAAAAGTGATTCGTTCCATTCAGAGGCGTCATTTTGAGCAAATAAAAGTAGTAGTTCCTGTTGTCCTCAATGCACTTAAAGCAGTAGATTTTGAAACAAGTGATGAGGATGTGAAATGTGACACTTTGTACGGCAGAGCGATGGACATTGCCAATTCCATCCAGTCGGTTTGTGAAAAGTTGGATGGCAAAGTACACGACAAGCTCCAATCTCTGCTCGGTCTTTATGCATTGCAAATCATGGCTCTTTTTTCAGTCAACATGAGCCATGAAGTTTCGAGCTGTCTTCCTTTTGTTTCAAAGTTGTCGTGTTTTCTTCCATTCTGTGGGTTGTCATATGTTGGTCTCATCACTGGATCTGATATTGACAAAATTTCCAACATTATTGGAGAAGATGAAGATGATTATACTGCTTGTTTTTCCTACATCAAGCACGGTGCATGTCTTTCAGTTCTTTGGGGATATCTTTCTGAAGAGGTTGCTCAGGCTGCAGAAGAAAAAATGAGTGATCTTAAAGATGAGCTAGCAACCAAACAAACTGAAAGATGGAAAGCTATAGGCATGTTCAGCCACATGCTCTCTTTTTCGGGTCTGTCTTGGAAATTAAAGAAAGATGCTATTGACTTCTTGCTTAGCATTAATGGCTCTGAAAGTTTTGATGACGATCGAAGTGACTACATGTTGTATATGCCGAGTATTTTTGCTGCTTTGCAGGCTGTTCAGATAATTATCATGTATGCACCAGATACAATACTAAGGAAGAATGCATTTGGTTTATTTAAAAAGTTACTTGCTGACATCCCATGTTCCGAAAGGTTCGACATGTTAAGAGCTCTGATTGTGAATAGCGACTCTCCCTCTATGGTTGCACTTCTTTTGGATCTTGTTAAAGGAGAAATGCACGTGGAGCTTTGCCGAAAAAGAGTTGCAACGGACGTTCAGCAAGTCGATGCAGAAGCACGTCCAAAACCATCATTTTGGACTGCAGGTATTCTCGAATTGGTGGAGCAGGTTTTGCGACCTCCAAAAGGGGGTCCTCCAGTGCTTCCAGAGCAGAGTGATGCGGTTCTTTCGGCTCTCAATCTATACCGATACGTGCTGATAACAGAGGCAACAGGAAGCACAAACCATACTGGAGTGTTATTGAAAAGCAATCTGCAGAAGTCCTATAACGAATGGCTTCTACCTCTCCGGATCCTCGTGACGGGCATCATGTCGGAGAACAAGACCGACTACAATCAAATTGCCGTGGACATGGAGTGTGCACTCAACCCAGTAGAACTTGTTTTATATCGCTGCATCGAGCTTGTTGAAGAGAGGTTGAGATGA 1821 42.94 MEKADDHCLSKLQLTERSDARPSVLRLREILAACAKSIENGDTRQSEAMVSELVNCLDSISEAAETELDNGDSESHVFEVLNEIYQFISSPLLDQGTIDTLSFDLPKAVSKFVGVDGCLEIVDNIIDRFVTMCSPRDMLSILCEALDFQMTKGTNSIAPFLSGLSKVIRSIQRRHFEQIKVVVPVVLNALKAVDFETSDEDVKCDTLYGRAMDIANSIQSVCEKLDGKVHDKLQSLLGLYALQIMALFSVNMSHEVSSCLPFVSKLSCFLPFCGLSYVGLITGSDIDKISNIIGEDEDDYTACFSYIKHGACLSVLWGYLSEEVAQAAEEKMSDLKDELATKQTERWKAIGMFSHMLSFSGLSWKLKKDAIDFLLSINGSESFDDDRSDYMLYMPSIFAALQAVQIIIMYAPDTILRKNAFGLFKKLLADIPCSERFDMLRALIVNSDSPSMVALLLDLVKGEMHVELCRKRVATDVQQVDAEARPKPSFWTAGILELVEQVLRPPKGGPPVLPEQSDAVLSALNLYRYVLITEATGSTNHTGVLLKSNLQKSYNEWLLPLRILVTGIMSENKTDYNQIAVDMECALNPVELVLYRCIELVEERLR 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10430130 10434315 - CmaCh01G014820.1 Cma01g01482 287175

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01482 606 PANTHER GLOMULIN 21 605 IPR019516 -
Cma01g01482 606 Pfam Uncharacterised protein family, YAP/Alf4/glomulin 397 577 IPR013877 -
Cma01g01482 606 Pfam Uncharacterised protein family, YAP/Alf4/glomulin 55 199 IPR013877 -
Cma01g01482 606 Coils Coil 325 345 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01482 K23345 GLMN; glomulin - csv:101214985 990.719
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g537 . . . . . . Bma04g00082 . . . Cma01g01482 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe04g00070 . . Sed13g1993 Cmo01g01538 . . . . . . . Bhi09g02969 Tan01g3596 Cmetu07g1020 . Hepe01g1987 Mch11g0524 . . . . . . . . . . . Cme07g00097
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006494 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 6 3 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01482 Cma_Chr01 FPKM 3.306247 3.200701 5.893566 5.51666 5.198225 5.253064 5.499186 6.171885 6.397075 6.323522