Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g01485 | ATGGCGTATCACAATCCCCTCTCCCAGGACCTTCCCCTCCACTTCTCCGACCAACAACCGCCGCAGAATCAACCACGTTCCGATGCCTCTTTGAGTACCATTCTGCCGGACCCCAAATCCCACCACCACCACCACCACCCGCCGCAAACGGCGCCGAATTGGCTGAACAACGCACTTCTCCGTAACCAAAACCCCCATTCTCACTACTCTACCGACACTACCACCACCGCCACCGCCGCCGTCAATACCAATTTCCTCAACCTTCACACCACAGCATCCGATTCCACTGTTTCTCACTCCTCTAACCAATGGCTCTCTCGTCCTATTCTCCAAAGAAACCACAGCGATGTTATTAACGATGTCGCCGCCGCTGCTGCTGGTGACAATATGATCGGTGCCGCTAACGATGCCAATAGCGGCGATGGATTGAACAAAAGCGACGGCATGGCGGTAGAACCTGGCGGCGGCGGTGGTGGTGGAGAAGGGGTTTTGAATTGGCAATATGCTCGTTACAAAACGGAGATTCTTGCTCATCCGCTTTATGAACAGCTGCTTTCAGCTCATGTCGCTTGTCTTCGCATCGCCACGCCCGTCGACCAATTGCCGAGGATTGACGCGCAGCTCGCTCAGTCTCAGAATGTTGTCGCTAAGTACTCCGCCTTGGGCCACACCGCGCCGCTCATGGTCGGCGATGACAAAGACCTCGATCAATTCATGACGCATTATGTTCTTTTGCTTTGTTCGTTCAAAGAACAACTCCAGCAACATGTTCGTGTCCATGCCATGGAAGCTGTAATGGCTTGCTGGGACATCGAGCAGTCGCTACAAAGCTTAACAGGAGTTTCACCCGGCGAAGGCACGGGAGCGACAATGTCGGATGACGACGACGATCAAGTCGATAGCGATTCAAATTTGTTCGAAGCGAGTTTAGATTGTCCTGACACCATGGGATTTGGGCCTCTTATTCCCACAGAAACTGAGAGGTCCTTGATGGAAAGGGTCAGACAAGAACTGAAGCATGAATTAAAAGCGGGTTACAAGGAGAAAATTGTGGATATAAGGGAAGAAATTCTGAGAAAAAGGAGAGCTGGAAAGCTCCCTGGTGATACCACCTCTGTTCTAAAACAATGGTGGCAATCACATTCAAAGTGGCCTTATCCTACTGAGGAAGATAAGGCAAGGTTGGTGCAAGAAACTGGTCTGCAATTAAAACAGATAAACAATTGGTTCATTAACCAGAGGAAGCGAAACTGGCATAGCAATCCTTCGAGTTCTACAAACTTGAAAAGCAAACGCAAAAGTAATGCAGGTGAAAACAGCAGCAACTGTTTCAAATGA | 1338 | 49.93 | MAYHNPLSQDLPLHFSDQQPPQNQPRSDASLSTILPDPKSHHHHHHPPQTAPNWLNNALLRNQNPHSHYSTDTTTTATAAVNTNFLNLHTTASDSTVSHSSNQWLSRPILQRNHSDVINDVAAAAAGDNMIGAANDANSGDGLNKSDGMAVEPGGGGGGGEGVLNWQYARYKTEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHTAPLMVGDDKDLDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQVDSDSNLFEASLDCPDTMGFGPLIPTETERSLMERVRQELKHELKAGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKSNAGENSSNCFK | 445 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 10450414 | 10455276 | + | CmaCh01G014850.1 | Cma01g01485 | 287178 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g01485 | 445 | MobiDBLite | consensus disorder prediction | 11 | 34 | - | - | |
Cma01g01485 | 445 | MobiDBLite | consensus disorder prediction | 414 | 445 | - | - | |
Cma01g01485 | 445 | Pfam | ELK domain | 337 | 358 | IPR005539 | GO:0003677 | |
Cma01g01485 | 445 | SMART | ELK_2 | 337 | 358 | IPR005539 | GO:0003677 | |
Cma01g01485 | 445 | ProSiteProfiles | 'Homeobox' domain profile. | 357 | 420 | IPR001356 | GO:0003677 | |
Cma01g01485 | 445 | SMART | KNOX2_2 | 225 | 280 | IPR005541 | GO:0003677|GO:0005634 | |
Cma01g01485 | 445 | ProSiteProfiles | ELK domain profile. | 337 | 357 | IPR005539 | GO:0003677 | |
Cma01g01485 | 445 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
Cma01g01485 | 445 | Gene3D | - | 358 | 419 | - | - | |
Cma01g01485 | 445 | PANTHER | CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN | 39 | 434 | - | - | |
Cma01g01485 | 445 | SMART | KNOX1_2 | 169 | 213 | IPR005540 | GO:0003677|GO:0005634 | |
Cma01g01485 | 445 | SUPERFAMILY | Homeodomain-like | 359 | 423 | IPR009057 | - | |
Cma01g01485 | 445 | Pfam | KNOX2 domain | 229 | 279 | IPR005541 | GO:0003677|GO:0005634 | |
Cma01g01485 | 445 | CDD | homeodomain | 360 | 421 | IPR001356 | GO:0003677 | |
Cma01g01485 | 445 | Pfam | KNOX1 domain | 171 | 212 | IPR005540 | GO:0003677|GO:0005634 | |
Cma01g01485 | 445 | Pfam | Homeobox KN domain | 377 | 416 | IPR008422 | GO:0003677|GO:0006355 | |
Cma01g01485 | 445 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 39 | 434 | - | - | |
Cma01g01485 | 445 | SMART | HOX_1 | 359 | 424 | IPR001356 | GO:0003677 | |
Cma01g01485 | 445 | MobiDBLite | consensus disorder prediction | 280 | 301 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01485 | Cma-Chr1:10450414 | Cma05g00364 | Cma-Chr5:1621023 | 0 | dispersed | |
Cma01g01485 | Cma-Chr1:10450414 | Cma12g00351 | Cma-Chr12:1779420 | 0 | wgd | |
Cma01g01485 | Cma-Chr1:10450414 | Cma09g00430 | Cma-Chr9:1876271 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34343 | PF03791 | KNOX2 | 1.00E-20 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g01485 | - | - | bhj:120085761 | 755.362 |