Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01485 ATGGCGTATCACAATCCCCTCTCCCAGGACCTTCCCCTCCACTTCTCCGACCAACAACCGCCGCAGAATCAACCACGTTCCGATGCCTCTTTGAGTACCATTCTGCCGGACCCCAAATCCCACCACCACCACCACCACCCGCCGCAAACGGCGCCGAATTGGCTGAACAACGCACTTCTCCGTAACCAAAACCCCCATTCTCACTACTCTACCGACACTACCACCACCGCCACCGCCGCCGTCAATACCAATTTCCTCAACCTTCACACCACAGCATCCGATTCCACTGTTTCTCACTCCTCTAACCAATGGCTCTCTCGTCCTATTCTCCAAAGAAACCACAGCGATGTTATTAACGATGTCGCCGCCGCTGCTGCTGGTGACAATATGATCGGTGCCGCTAACGATGCCAATAGCGGCGATGGATTGAACAAAAGCGACGGCATGGCGGTAGAACCTGGCGGCGGCGGTGGTGGTGGAGAAGGGGTTTTGAATTGGCAATATGCTCGTTACAAAACGGAGATTCTTGCTCATCCGCTTTATGAACAGCTGCTTTCAGCTCATGTCGCTTGTCTTCGCATCGCCACGCCCGTCGACCAATTGCCGAGGATTGACGCGCAGCTCGCTCAGTCTCAGAATGTTGTCGCTAAGTACTCCGCCTTGGGCCACACCGCGCCGCTCATGGTCGGCGATGACAAAGACCTCGATCAATTCATGACGCATTATGTTCTTTTGCTTTGTTCGTTCAAAGAACAACTCCAGCAACATGTTCGTGTCCATGCCATGGAAGCTGTAATGGCTTGCTGGGACATCGAGCAGTCGCTACAAAGCTTAACAGGAGTTTCACCCGGCGAAGGCACGGGAGCGACAATGTCGGATGACGACGACGATCAAGTCGATAGCGATTCAAATTTGTTCGAAGCGAGTTTAGATTGTCCTGACACCATGGGATTTGGGCCTCTTATTCCCACAGAAACTGAGAGGTCCTTGATGGAAAGGGTCAGACAAGAACTGAAGCATGAATTAAAAGCGGGTTACAAGGAGAAAATTGTGGATATAAGGGAAGAAATTCTGAGAAAAAGGAGAGCTGGAAAGCTCCCTGGTGATACCACCTCTGTTCTAAAACAATGGTGGCAATCACATTCAAAGTGGCCTTATCCTACTGAGGAAGATAAGGCAAGGTTGGTGCAAGAAACTGGTCTGCAATTAAAACAGATAAACAATTGGTTCATTAACCAGAGGAAGCGAAACTGGCATAGCAATCCTTCGAGTTCTACAAACTTGAAAAGCAAACGCAAAAGTAATGCAGGTGAAAACAGCAGCAACTGTTTCAAATGA 1338 49.93 MAYHNPLSQDLPLHFSDQQPPQNQPRSDASLSTILPDPKSHHHHHHPPQTAPNWLNNALLRNQNPHSHYSTDTTTTATAAVNTNFLNLHTTASDSTVSHSSNQWLSRPILQRNHSDVINDVAAAAAGDNMIGAANDANSGDGLNKSDGMAVEPGGGGGGGEGVLNWQYARYKTEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHTAPLMVGDDKDLDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQVDSDSNLFEASLDCPDTMGFGPLIPTETERSLMERVRQELKHELKAGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKSNAGENSSNCFK 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10450414 10455276 + CmaCh01G014850.1 Cma01g01485 287178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01485 445 MobiDBLite consensus disorder prediction 11 34 - -
Cma01g01485 445 MobiDBLite consensus disorder prediction 414 445 - -
Cma01g01485 445 Pfam ELK domain 337 358 IPR005539 GO:0003677
Cma01g01485 445 SMART ELK_2 337 358 IPR005539 GO:0003677
Cma01g01485 445 ProSiteProfiles 'Homeobox' domain profile. 357 420 IPR001356 GO:0003677
Cma01g01485 445 SMART KNOX2_2 225 280 IPR005541 GO:0003677|GO:0005634
Cma01g01485 445 ProSiteProfiles ELK domain profile. 337 357 IPR005539 GO:0003677
Cma01g01485 445 MobiDBLite consensus disorder prediction 1 55 - -
Cma01g01485 445 Gene3D - 358 419 - -
Cma01g01485 445 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 39 434 - -
Cma01g01485 445 SMART KNOX1_2 169 213 IPR005540 GO:0003677|GO:0005634
Cma01g01485 445 SUPERFAMILY Homeodomain-like 359 423 IPR009057 -
Cma01g01485 445 Pfam KNOX2 domain 229 279 IPR005541 GO:0003677|GO:0005634
Cma01g01485 445 CDD homeodomain 360 421 IPR001356 GO:0003677
Cma01g01485 445 Pfam KNOX1 domain 171 212 IPR005540 GO:0003677|GO:0005634
Cma01g01485 445 Pfam Homeobox KN domain 377 416 IPR008422 GO:0003677|GO:0006355
Cma01g01485 445 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 39 434 - -
Cma01g01485 445 SMART HOX_1 359 424 IPR001356 GO:0003677
Cma01g01485 445 MobiDBLite consensus disorder prediction 280 301 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01485 Cma-Chr1:10450414 Cma05g00364 Cma-Chr5:1621023 0 dispersed
Cma01g01485 Cma-Chr1:10450414 Cma12g00351 Cma-Chr12:1779420 0 wgd
Cma01g01485 Cma-Chr1:10450414 Cma09g00430 Cma-Chr9:1876271 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34343 PF03791 KNOX2 1.00E-20 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01485 - - bhj:120085761 755.362