Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01489 ATGGGGAAGCCAACGGGAAAGAAGAAGGAAAATGTCGGGGATAAGCCTGGAAATGCTAATTCTAAGCCTCCCCGGCCTTCCGATCGGAACTCGAAAGCGTTTGATGAAGATACGGCCATCTTCATTAACATGTCCCAAGAACTCAAGGAGGAAGGCAAGCGGCTATTCCAGAAGCGAGATCACGAAGGCGCCTTGTTGAAATACGAGAAAGCTTTAAAGCTTCTGCCGAGGAATCACATTGATGTTGCTCATCTCCATATCAACATGGCTTCCTGTTATATGCAATTAGGGATGGGCGGGTATCCACAGGCAATTAACGAGTGCAATTTGGCGTTGGAGGCTCATCCGAGGTACACCAAGGCGCTGCTGAAGAGAGCGAGATGTTACGAGGCATTGAATTGGTTCGATTTGGCATTGAAAGACCTGAGTACTGTTTTGAGCTTAGAGACTAATAATCTCTCTGCGATGGAGATTTTGGATAGTGTCAAGAACACAATGAGAGAAAAGGGTGTCAATATCGACGAGAAAGAACTCGGTTTAACAACTCTAAAGCTGCCTCCTGCAGCACGTTTTCGTAAGATTGTCAAGGAGAAACTAAGGAAGAAGAAGAATAAGAAAGTCGAGGAGAAGGCTGATCAGGTGCCTCAGGTTAATCAGGTGCCTCAGGTGCCTCAGGTTAATCAGGTGCCTCAGGTGCCTCAGGTTAATCAGGTGCCTCAGGTGCCTCAGGTGCCTCAGGTTAATCAGGTGCCTCAGGTGCCTCAGGTTAATCAGGTGCCTCAGGTGCCTCAGGTTGATCAGGTGCCTCAGGTTGATCAGGTGCCTCAGGTTGATCAGGTTGAAGATAAGGAAGTTACAACGGTTGAGGAAGATAAATTGTTCGTCGAACCGGCCAAGGAAAAGCCAGTCTCGAAGACGGTGAAGCTAGTATTTGGAGAAGACATAAGATGGGCGGAATTACCTACAAATTGCAGCATTAAATTGGCGAGCAAGATAGTTCGAGACAGATTTCACAGCTTAAGGGGTGTTCTTGTGAAGTACAGAGATCAAGAGGGCGATTTGATTACAATCACTACAACCAAAGAGTTAAGGGCAGTTGAAGCATCTAGTCACTTACAGGGTTCTCTTAGACTGTACATCACAGAGGTCAGCCCTGATCAGGAACCAATCTACAAGGAAACCGAAAACCATGAGGCGCTTACAGAGCTTGATAAAAGAACAACTACGGTCGAGGACTGGATAATCCAGTTTGCACGATTGTTCAAGAACCAAGTCGGAGTTGATTCTGATTCTTACTTGAATCTTCATGAGCTTGGAATGAAACTGTATTCAGAAGCAATGGAGGACACCGTAACCGGTGAGAGTGCTCAAGAGCTTTTCAACATTGCAGCTGACAAGTTTCAAGAAATGGCAGCTCTGGCATTGTTCAACTGGGGGAACATTCACATGTCCAGAGCAAGGAAGCAGCTGTTCTTCCCAGAAGACGGTTCAAGAGAAGTTTTACTTCTTAGGATTAAGGATGCATATGAGTGGGCAGAAAAAGAATACAAGAAGGCCGAAATTCGATACGAAGAAGCTCTAAATGTAAAGCCTGACTTCTATGAAAGCTTCCTTGCACTTGGGCAGCAGCAGTTTGAGCAAGCTAAGCTTTGCTGGTATTATGCAATGGCGAGCAGAAGCAAAATCGATTTAGAGTCGAGCTTTTCCTCGGAGGTCTTGCAGCTTTATAACAAGGCGGAAGACAGCATGGAGAAGGGCATGATGATGTGGGAAGAAATGGAGGAGCAGCGCCTGAATGGACTCTCCAAAAGTGAAAAATACAAATCTGAGTTGGGAAAGATGGGATTGGAAAGACTGTATAGTGAGATACCTGCTGATGAAGCTGCAGAATTGGCTTCAAACATGAGATCACAGATATATCTTTTATGGGGCACCATACTGTATGAGCGCTCTGTTGTGGAATATAAACTTGAGCTACCAACCTGGGAGGAATGCTTGGAGGTGTCGGTCGATAAGTTCGACCTCGCCGGTGCTTCCCAGACAGATATTGCAGTTATGATAAAGAATCATTGTTCCAATGAAACTGCACAGGAAGGTTTCGGTTTCGGTTTCAAAATCGACGAGATCGTACAGGCATGGAATGAAATGTATGATGCTAAAAGGTGGCAGTTTGGTGTTCCATCTTTTCGCCTCGAGCCTTTGTTTCGACGCCGGGTTCCAAAACTTCACTCCACTTTGGAGCATTTTTGA 2250 45.69 MGKPTGKKKENVGDKPGNANSKPPRPSDRNSKAFDEDTAIFINMSQELKEEGKRLFQKRDHEGALLKYEKALKLLPRNHIDVAHLHINMASCYMQLGMGGYPQAINECNLALEAHPRYTKALLKRARCYEALNWFDLALKDLSTVLSLETNNLSAMEILDSVKNTMREKGVNIDEKELGLTTLKLPPAARFRKIVKEKLRKKKNKKVEEKADQVPQVNQVPQVPQVNQVPQVPQVNQVPQVPQVPQVNQVPQVPQVNQVPQVPQVDQVPQVDQVPQVDQVEDKEVTTVEEDKLFVEPAKEKPVSKTVKLVFGEDIRWAELPTNCSIKLASKIVRDRFHSLRGVLVKYRDQEGDLITITTTKELRAVEASSHLQGSLRLYITEVSPDQEPIYKETENHEALTELDKRTTTVEDWIIQFARLFKNQVGVDSDSYLNLHELGMKLYSEAMEDTVTGESAQELFNIAADKFQEMAALALFNWGNIHMSRARKQLFFPEDGSREVLLLRIKDAYEWAEKEYKKAEIRYEEALNVKPDFYESFLALGQQQFEQAKLCWYYAMASRSKIDLESSFSSEVLQLYNKAEDSMEKGMMMWEEMEEQRLNGLSKSEKYKSELGKMGLERLYSEIPADEAAELASNMRSQIYLLWGTILYERSVVEYKLELPTWEECLEVSVDKFDLAGASQTDIAVMIKNHCSNETAQEGFGFGFKIDEIVQAWNEMYDAKRWQFGVPSFRLEPLFRRRVPKLHSTLEHF 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10466794 10470332 - CmaCh01G014890.1 Cma01g01489 287182

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01489 749 SMART tpr_5 119 152 IPR019734 GO:0005515
Cma01g01489 749 SMART tpr_5 500 533 IPR019734 GO:0005515
Cma01g01489 749 SMART tpr_5 45 78 IPR019734 GO:0005515
Cma01g01489 749 SMART tpr_5 83 118 IPR019734 GO:0005515
Cma01g01489 749 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Cma01g01489 749 MobiDBLite consensus disorder prediction 1 15 - -
Cma01g01489 749 Gene3D - 304 383 - -
Cma01g01489 749 PANTHER PROTEIN CLMP1 1 749 IPR044517 -
Cma01g01489 749 SUPERFAMILY CAD & PB1 domains 295 393 - -
Cma01g01489 749 SUPERFAMILY beta-sandwich domain of Sec23/24 215 276 - -
Cma01g01489 749 Pfam PB1 domain 305 381 IPR000270 GO:0005515
Cma01g01489 749 CDD PB1 306 381 - -
Cma01g01489 749 PANTHER PROTEIN PHOX4 1 749 - -
Cma01g01489 749 SMART PB1_new 304 383 IPR000270 GO:0005515
Cma01g01489 749 SUPERFAMILY TPR-like 427 547 IPR011990 GO:0005515
Cma01g01489 749 Coils Coil 502 529 - -
Cma01g01489 749 Gene3D Tetratricopeptide repeat domain 40 179 IPR011990 GO:0005515
Cma01g01489 749 SUPERFAMILY TPR-like 45 548 IPR011990 GO:0005515
Cma01g01489 749 MobiDBLite consensus disorder prediction 1 34 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01489 - - - cmax:111480413 916.376
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01489 Cma-Chr1:10466794 Cma10g00508 Cma-Chr10:2311073 0 dispersed
Cma01g01489 Cma-Chr1:10466794 Cma09g00433 Cma-Chr9:1890197 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g554 . . . . . . . . . . Cma01g01489 . . . . . . . . . . . . . Cla05g01710 Cam05g1825 Cec05g1837 Cco05g1895 Clacu05g1810 Cmu05g1696 Cre05g1825 . . . . Lsi04g02102 . . . . . . Bda13g01251 . . . . Sed13g1998 Cmo01g01543 . . . . . . . Bhi09g02959 Tan01g3607 Cmetu07g2079 . Hepe01g1993 . . . . . . . . . . . . Cme07g00090
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006619 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01489 Cma_Chr01 FPKM 0.166087 0.172547 0.306007 0.242536 0.419761 0.344988 0.404047 1.182151 1.288585 0.967034