Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01490 ATGTCCTACTCGAATATGGCGGGAGATCTACGCTCTTGGTCACACGCGCTCGTCAGAATCTCTCCCTACACCTTCTCCGCCGTCGGCATTGCCATAGCCATCGGCATCTCCGTCCTCGGAGCTGCCTGGGGGATCTACATAACCGGAAGCAGTTTGATCGGTGCTGCAATTAAAGCTCCGCGTATTACCTCGAAGAATCTAATTAGCGTAATTTTCTGTGAAGCCGTGGCCATATATGGTGTCATTGTGGCCATCATCCTACAGACAAAACTGGAGAGTGTTCCAGCATCTAAAATATATGCTCCAGAGTCTCTAAGAGCAGGATATTCAATTTTTGCCTCTGGAATTATTGTGGGCTTCGCCAACCTGGTTTGCGGGTTATGCGTAGGGGTTATTGGAAGCAGTTGTGCATTGTCTGATGCCCAAAACTCATCCCTTTTTGTAAAGATTCTTGTGATCGAGATCTTTGGAAGCGCACTCGGGTTATTTGGTGTAATTGTAGGAATAATAATGTCTGCTCAAGCTACATGGCCTGCAAAGGCAGTTTAA 549 46.99 MSYSNMAGDLRSWSHALVRISPYTFSAVGIAIAIGISVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPASKIYAPESLRAGYSIFASGIIVGFANLVCGLCVGVIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPAKAV 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10471836 10473944 + CmaCh01G014900.1 Cma01g01490 287183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01490 182 Gene3D - 23 178 IPR035921 -
Cma01g01490 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Cma01g01490 182 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cma01g01490 182 Pfam ATP synthase subunit C 29 87 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cma01g01490 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 7 179 - -
Cma01g01490 182 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
Cma01g01490 182 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 7 179 - -
Cma01g01490 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
Cma01g01490 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Cma01g01490 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cma01g01490 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cma01g01490 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cma01g01490 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01490 Cma-Chr1:10471836 Cma12g00314 Cma-Chr12:1614332 1.30E-109 dispersed
Cma01g01490 Cma-Chr1:10471836 Cma05g00409 Cma-Chr5:1802161 1.02E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01490 K03661 - tcc:18588964 308.145