Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01495 ATGCAGGAACGAACCACCGCCGTCGCCTCCGCCAGTCGTACGCGATCGAGCAGCGAAAGATCGTCGAGTTCCGCGTTTCTACTTGATGTTAAAGAAGATATAGGAGTGGGGAGTGATGAGGAGGAGATTAGCAGAGTGCCGCAGATCTGCGGAAACTCTGCCTCTGCTGCCGGCGGCACTTCAGCATCTGGCAAAGCCCCTGCATCAGATGGCGTAAGGAGCAGAGGACGAAGCTCCGCTGACAAAGAAAGTAAAAGGCTGAAGAGATTGTTAAGAAACAGAGTTTCAGCACAGCAAGCAAGGGAGAGGAAAAAGGCGTATTTGGGCGACTTGGAAATAAGAGCAGCAAACTTGTTGAAAAGAAACTCCGAGCTTGAAGAGAATCTGTCCACGTTACAAAATGAGAATCAGATGCTTAGACACATACTAAAGAACACAACAACCAACAAGAGAAGTGATGGGGACACTGCTAATGCAAACCAGACTGTATAG 492 48.78 MQERTTAVASASRTRSSSERSSSSAFLLDVKEDIGVGSDEEEISRVPQICGNSASAAGGTSASGKAPASDGVRSRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLGDLEIRAANLLKRNSELEENLSTLQNENQMLRHILKNTTTNKRSDGDTANANQTV 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10499105 10502265 + CmaCh01G014950.1 Cma01g01495 287188

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01495 163 Coils Coil 108 142 - -
Cma01g01495 163 CDD bZIP_HY5-like 86 137 - -
Cma01g01495 163 Gene3D Single helix bin 104 145 - -
Cma01g01495 163 MobiDBLite consensus disorder prediction 1 25 - -
Cma01g01495 163 Coils Coil 80 100 - -
Cma01g01495 163 MobiDBLite consensus disorder prediction 75 103 - -
Cma01g01495 163 Pfam bZIP transcription factor 82 142 IPR004827 GO:0003700|GO:0006355
Cma01g01495 163 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 1 152 IPR044280 GO:0000981|GO:0045944
Cma01g01495 163 MobiDBLite consensus disorder prediction 48 62 - -
Cma01g01495 163 Coils Coil 160 163 - -
Cma01g01495 163 SMART brlzneu 81 145 IPR004827 GO:0003700|GO:0006355
Cma01g01495 163 SUPERFAMILY Leucine zipper domain 85 143 IPR046347 GO:0003700|GO:0006355
Cma01g01495 163 MobiDBLite consensus disorder prediction 38 103 - -
Cma01g01495 163 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 83 146 IPR004827 GO:0003700|GO:0006355
Cma01g01495 163 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 1 152 - -
Cma01g01495 163 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 88 103 IPR004827 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01495 K16241 HY5; transcription factor HY5 - csv:101205952 217.238
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01495 Cma12g00329 CCT
Cma01g01495 Cma05g00390 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01495 Cma-Chr1:10499105 Cma12g00329 Cma-Chr12:1688568 1.50E-48 dispersed
Cma01g01495 Cma-Chr1:10499105 Cma05g00390 Cma-Chr5:1712978 1.31E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g458 . . Bda01g00765 . Bpe02g01240 . . . Cmo05g00389 Cmo12g00279 Cma01g01495 Cma05g00390 . Car12g00311 Sed07g1964 Cpe07g00288 . Bhi04g00047 Tan02g2761 Cmetu03g1346 . Hepe10g0217 . Lcy13g1832 Cla05g01750 Cam05g1863 Cec05g1875 Cco05g1939 Clacu05g1854 Cmu05g1735 Cre05g1867 Cone4ag1802 . Cone17ag1030 . Lsi04g02144 Csa03g04347 Chy04g00355 Cme03g01624 Blo17g00025 Blo18g00033 Bda01g00995 Bda13g01268 Bpe14g00575 . Bma01g01283 Bma02g00029 . Cmo01g01551 . . Cma12g00329 . Car05g00331 Cpe11g00334 Cpe02g00460 . . . . . . . Cla08g01323 Cam08g1785 Cec08g1363 Cco08g1490 Clacu08g1479 . Cre08g1268 Lsi08g01193 . Chy03g01131 Cme04g00394
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014246 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 2 1 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34344 PF00170 bZIP_1 1.00E-11 CL0018 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01495 Cma_Chr01 FPKM 0.0 0.0 0.978399 0.819446 8.864888 11.421597 7.266029 0.0 0.0 0.428488