Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01497 ATGGAAGCAAATGCGGGATTGGTGGCTGGATCTTACAAGAGGAATGAGCTTGTTCGTATTCGCCACGATTCGGACAATGGGCCTAAACCTCTGAAGAACTTAAACAGCCAAATATGTCAAATATGCGGCGACACAGTTGGCCTTACGGCCTCCGGTGATATCTTTGTCGCTTGCAACGAATGCGCCTTTCCTGTTTGTCGTCCATGTTACGAGTACGAGAGGAAAGACGGGAACCAATCTTGCCCTCAGTGCAAGACTAGATACAAGAGGCACAAAGGTAGTCCTCGAGTCGATGGCGATGATGACGAGGATGACGTGGATGATATCGAGAACGAGTTTAAATACACCCAAGGAAGTAGCAAGACAAAACAACAATGGCATGGGGAAGATACTGAGCTATCAACTTCTACAAGACATGAATCTCAACAGCCTATACCACTCCTTACCAATGGCCAATCAGTTTCGGGTGAAATTCCTTGTGCAACACCCGACAATCAATCAGTGCGAACGACATCCGGTCCATTGGGTCCTCCAGACAAGCATTTGCACTCACATCCTTACATCGACCCTCGACAGCCAGTTCCTGTGAGAATTGTTGACCCATCAAAGGATTTAAACTCTTATGGCCTTGGGAATGTTGATTGGAAGGAAAGAGTGGAAGGTTGGAAATTGAAACAAGAGAAGAACATAATGCAGATGACAAGTAGATACTCAGAAGGGAAGGGGGACTTGGAAGGCACTGGCTCCAATGGAGAAGAACTTCAAATGGCTGATGATGCTAGACAACCTCTAAGTCGTGTGGTTCCGATTCCATCTTCTCACTTGACCCCGTATCGTGTCGTGATCATACTTCGACTTATTATTCTCGGCTTCTTCTTACAGTACCGTTTGACACACCCGGTGAAGGATGCATACCCCTTGTGGTTAACATCAGTTATTTGTGAAGTTTGGTTTGCACTATCCTGGCTTTTGGATCAGTTCCCGAAATGGTCTCCGGTTAATCGTGAAACTTTCCTTGAGCGACTCGCATTAAGATACGATCGAGAAGGAGAACCGTCGCAGTTAGCTCCTGTTGATGTTTTTGTTAGTACTGTGGATCCTCTCAAAGAGCCTCCACTTGTCACGGCTAACACCGTGCTTTCCATCCTTGCTGTGGACTACCCTGTCGACAAAGTCTCCTGCTATGTGTCGGATGATGGTTCGGCAATGCTTACGTTTGAATCGCTCTCTGAAACTGCAGAGTTTGCAAGGAAGTGGGTGCCTTTTTGCAAGAAGCATAGCATTGAACCAAGGGCCCCAGAGTTTTATTTTGCTCAAAAGATAGATTACTTGAAGGACAAGATTAAACCTTCGTTCGTAAAAGAGCGTCGAGCGATGAAGAGGGAATATGAAGAATTCAAGATTCGAATCAATGCACTTGTTGCCAAAGCACAAAAGATGCCTGAGGAAGGTTGGACCATGCAGGATGGAACGCCATGGCCAGGAAACAATCCCAGGGATCATCCTGGAATGATACAGGTTTTCTTAGGCCACAGTGGAGGTCTCGATACCGATGGCAATGAACTACCTAGACTTGTTTATGTTTCTCGTGAGAAACGTCCCGGCTTCCAGCACCACAAAAAAGCTGGAGCTATGAATGCATTGATCCGAGTTTCTGCCGTGCTAACTAACGGAGCGTATCTATTGAATGTCGATTGTGATCACTACTTTAACAACAGCAAAGCTCTGAAGGAAGCCATGTGTTTCATGATGGACCCTGCTTATGGGAAGAAAACATGTTACGTACAGTTCCCACAACGTTTTGATGGCATTGATTTGCACGATCGATATGCCAATCGTAACATTGTCTTTTTCGACATAAACTTGAAAGGGTTGGATGGTCTCCAGGGTCCTGTCTATGTCGGAACTGGTTGTTGTTTCAATCGACAAGCTTTATACGGTTACGATCCAGTCCTGACCGAGGCAGATTTGGAACCGAATATTATCATTAAGAGTTGTTGTGGTTCGAGAAAGAAGCATCGGAATAAGTACGTCGACAAGAAGAGGGCTGCAAAAAGGAATGAGTCTACCATTCCGATCTTTAATATGGAAGATATTGAGGAAGGCGTTGAAGGATATGATGATGAGAGTTCACTCCTGATGTCTCAGAAGCGTATAGAAAAACGCTTCGGCCAATCTCCGGTTTTCATTGCAGCCACTTTCATGGAACAGGGAGGTATACCTCCTTCAACCAACCCTGCAACACTGCTAAAGGAAGCAATTCATGTCATCAGTTGTGGTTATGAAGACAAGACAGAATGGGGCAAGGAGATTGGGTGGATCTATGGTTCTGTGACAGAAGATATTTTAACGGGGTTTAAGATGCATGCTCGTGGTTGGATTTCAATATATTGTATGCCTCCACGCCCGGCGTTCAAGGGATCTGCTCCAATCAATCTTTCGGATCGATTGAACCAAGTGCTTCGATGGGCTTTGGGTTCGATAGAGATTCTGCTCAGCAGGCATTGTCCTATCTGGTATGGCTACAATGGAAGGCTAAAGCTTTTGGAGAGAATAGCATACATCAATACCATTGTCTACCCTATCACCTCAATTCCACTTCTTGCATACTGTACGCTTCCAGCCTTCTGTCTTTTGACCGGAAAGTTCATCATTCCTGAGATAAGCAACTTTGCCAGTATGTGGTTCATTCTCCTTTTCGTCTCCATTTTTGCCACCGGTATTCTCGAGCTTAGATGGAGCGGGGTTAGTATTGAAGACTGGTGGAGAAACGAACAATTTTGGGTCATTGGTGGTACTTCAGCTCATCTGTTTGCTGTCTTCCAAGGTCTCTTAAAGGTTCTTGCTGGAATCGATACCAACTTCACCGTCACGTCGAAAGCCAGCGACGATGATGGGGATTTTGCAGAGCTTTACGTGTTCAAATGGACTTCCCTCCTCATCCCTCCCACCACTGTCCTTATTATAAACATGGTTGGCATAGTGGCTGGTGTTTCATATGCCATTAACAGTGGTTACCAATCTTGGGGCCCTCTCTTTGGGAAGCTGTTCTTTGCATTATGGGTCATTGTCCATTTATATCCTTTCCTAAAGGGTTTATTGGGGAGGCAAAACCGAACGCCAACCATTGTCATCGTCTGGTCGATTCTCCTCGCTTCGATATTCTCCTTGCTTTGGGTGCGAATCGATCCGTTCACCTCTGCGTCGACGAAGGCTGCCAATGGTCAATGTGGTATCAATTGCTAG 3246 45.63 MEANAGLVAGSYKRNELVRIRHDSDNGPKPLKNLNSQICQICGDTVGLTASGDIFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPRVDGDDDEDDVDDIENEFKYTQGSSKTKQQWHGEDTELSTSTRHESQQPIPLLTNGQSVSGEIPCATPDNQSVRTTSGPLGPPDKHLHSHPYIDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNIMQMTSRYSEGKGDLEGTGSNGEELQMADDARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRLTHPVKDAYPLWLTSVICEVWFALSWLLDQFPKWSPVNRETFLERLALRYDREGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFESLSETAEFARKWVPFCKKHSIEPRAPEFYFAQKIDYLKDKIKPSFVKERRAMKREYEEFKIRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGLQGPVYVGTGCCFNRQALYGYDPVLTEADLEPNIIIKSCCGSRKKHRNKYVDKKRAAKRNESTIPIFNMEDIEEGVEGYDDESSLLMSQKRIEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERIAYINTIVYPITSIPLLAYCTLPAFCLLTGKFIIPEISNFASMWFILLFVSIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGDFAELYVFKWTSLLIPPTTVLIINMVGIVAGVSYAINSGYQSWGPLFGKLFFALWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTSASTKAANGQCGINC 1081
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10519143 10526947 + CmaCh01G014970.1 Cma01g01497 287190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01497 1081 MobiDBLite consensus disorder prediction 137 173 - -
Cma01g01497 1081 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Cma01g01497 1081 Pfam Cellulose synthase 358 1072 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cma01g01497 1081 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 19 1081 - -
Cma01g01497 1081 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Cma01g01497 1081 PANTHER CELLULOSE SYNTHASE 19 1081 - -
Cma01g01497 1081 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Cma01g01497 1081 Pfam Zinc-binding RING-finger 29 106 IPR027934 -
Cma01g01497 1081 SUPERFAMILY Nucleotide-diphospho-sugar transferases 372 897 IPR029044 -
Cma01g01497 1081 MobiDBLite consensus disorder prediction 74 194 - -
Cma01g01497 1081 Coils Coil 456 476 - -
Cma01g01497 1081 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 516 654 IPR029044 -
Cma01g01497 1081 SUPERFAMILY RING/U-box 22 111 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01497 Cma09g00468 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01497 Cma-Chr1:10519143 Cma07g01319 Cma-Chr7:7466028 0 dispersed
Cma01g01497 Cma-Chr1:10519143 Cma09g00468 Cma-Chr9:2053465 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01497 K10999 - csv:101205724 2158.26