Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01500 ATGAAGTTTTGGAAGATTCTGTGTATTTTGATCGAATCTACTTTGCCTGAATGGAGAGATGAGTTCATTTCTTATAAGAAATTGAAGAAGCAATTGAAATTGATGTACCCTGATAAAGATGGTAAACCTAAGCGCTTAAAGTTTGATGGAGAAGCATCCATGGAGGTTTTTCTTAATCTGCTTGAGGAAGAATTGGACAAGTTTAACCAGTTCTTTGTAAGCAAGGAGGAGTATTATGTTATTAAGTGGAGTTTATTGCAGGAGAGGGTAGCAGAGATTGGAGATTCGGACGAACGGTTGATGAAAGTAGGGAGAGACATTGTGGACTTCCATGGAGAAATGGTTTTGTTAGAGAATTATAGTGCCTTGAATTACACAGGACTGGCAAAGATTCTAAAGAAGTATGACAAGCGAAGTGGCGAGCTCATCCGTGTGCCTTTCATCAAGAAGGTGTTACGCCAACCGTTCTACTCAACCGATGTGCTCGGTCAGCTATTAAAGGAGTGTGAGATGGTACTCGATCTTCTCTTCTTCAAGAAAGACCTGTCATCTGCTGCCGAAACAGTCAATGAGGAAGGAAGAAGGGGTGGCTCGGAGGCGAAGACTGCATCGGAGAGTAAAGAAAAGGTGTTGAACATTCCCGAAGATCTTGAAGAGATCGAGTACATGGAGAGTATGTACATGAAGCTAACATTATCAGCCCTGAAAGCTCTGAAGGAGATTAGAGGTGGAAGTTCAACAATAGATGATTTCTCGTGGCTTTGA 765 41.7 MKFWKILCILIESTLPEWRDEFISYKKLKKQLKLMYPDKDGKPKRLKFDGEASMEVFLNLLEEELDKFNQFFVSKEEYYVIKWSLLQERVAEIGDSDERLMKVGRDIVDFHGEMVLLENYSALNYTGLAKILKKYDKRSGELIRVPFIKKVLRQPFYSTDVLGQLLKECEMVLDLLFFKKDLSSAAETVNEEGRRGGSEAKTASESKEKVLNIPEDLEEIEYMESMYMKLTLSALKALKEIRGGSSTIDDFSWL 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10538615 10542251 - CmaCh01G015000.1 Cma01g01500 287193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01500 254 CDD SPX_AtSPX1_like 2 138 - -
Cma01g01500 254 ProSiteProfiles SPX domain profile. 1 149 IPR004331 -
Cma01g01500 254 Pfam SPX domain 105 151 IPR004331 -
Cma01g01500 254 PANTHER SPX DOMAIN-CONTAINING PROTEIN 1 1 253 - -
Cma01g01500 254 PANTHER SPX DOMAIN-CONTAINING PROTEIN 3 1 253 IPR031142 GO:0016036
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01500 - - - cpep:111788231 479.944
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01500 Cma-Chr1:10538615 Cma12g01207 Cma-Chr12:9449330 7.91E-86 dispersed
Cma01g01500 Cma-Chr1:10538615 Cma11g00548 Cma-Chr11:2631145 2.09E-79 wgd
Cma01g01500 Cma-Chr1:10538615 Cma05g01294 Cma-Chr5:9858838 2.44E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g476 Blo01g01384 . Bda01g00742 . . Bpe02g00565 . . . . Cma01g01500 . . . . . . . . . . . . . Cla05g01742 Cam05g1855 Cec05g1867 Cco05g1930 Clacu05g1846 Cmu05g1727 Cre05g1859 . . . . Lsi04g02134 Csa03g04340 Chy04g00362 . . . . . . . . . Sed13g2028 Cmo01g01556 . . . . . . Cpe02g00455 Bhi09g02250 Tan01g3654 Cmetu04g0930 . Hepe01g2027 Mch11g0561 . . . . . . . . . . . Cme04g00404
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014025 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01500 Cma_Chr01 FPKM 16.347355 17.494667 1.643964 1.766994 6.143697 7.3887 6.571464 4.926931 4.257959 5.034224