Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01502 ATGGTTTATTCGAGGAAGTTCAGGGGAGTTAGGCAGCGGCAGTGGGGCTCGTGGGTGTCAGAAATCCGCCACCCATTGCTGAAAAGAAGGGTGTGGCTAGGGACATTCGACACAGCAGAGGATGCAGCACGAGCATATGATCAAGCATCCATCTTGATGAACGGCCAAAACGCCAAGACCAATTTCCCTGCATCGAAAGACCGATCTGAAGAAGCCAGCCATGGCCATAGCGCTTCTCCATTGTCCCCAAAAACACTCTCAGAGCTACTCAGCACAAAGCTCAGGAAGTGCTGCAAGAACCCTTCTCCCTCCTTGACATGCCTGCGACTCGACAGTGACAACGCCCACATCGGTGTCTGGCAGAAGCGCGCAGGCACTCGAGCAGCCTCTGATTGGGTCATGAGGATTGAGTTAGGAAAGAAGGAGACCCCGTCACCGTCAATGTCGCTGTCCCCGTTGCCCGAACCTGCAAGCCAGGAAGCTGAAGGCTGCCAAAATGGGATTGATGAAGAAGACAGAATTGCAATGCAAATGATCGAAGAGTTGCTTAGTTGGAACTGCCCCCTTCCTTCAACTTCAAGCTAG 585 52.82 MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKTNFPASKDRSEEASHGHSASPLSPKTLSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVWQKRAGTRAASDWVMRIELGKKETPSPSMSLSPLPEPASQEAEGCQNGIDEEDRIAMQMIEELLSWNCPLPSTSS 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10548202 10550079 - CmaCh01G015020.1 Cma01g01502 287195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01502 194 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Cma01g01502 194 MobiDBLite consensus disorder prediction 142 164 - -
Cma01g01502 194 MobiDBLite consensus disorder prediction 58 84 - -
Cma01g01502 194 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Cma01g01502 194 CDD AP2 6 65 IPR001471 GO:0003700|GO:0006355
Cma01g01502 194 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Cma01g01502 194 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Cma01g01502 194 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Cma01g01502 194 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 192 - -
Cma01g01502 194 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Cma01g01502 194 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Cma01g01502 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 192 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01502 Cma-Chr1:10548202 Cma01g01479 Cma-Chr1:10416824 1.91E-30 dispersed
Cma01g01502 Cma-Chr1:10548202 Cma11g00547 Cma-Chr11:2624261 3.22E-71 wgd
Cma01g01502 Cma-Chr1:10548202 Cma05g01293 Cma-Chr5:9852901 1.02E-72 wgd
Cma01g01502 Cma-Chr1:10548202 Cma09g00461 Cma-Chr9:2028621 6.39E-124 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34345 PF00847 AP2 1.80E-12 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01502 - - mcha:111006480 345.125