Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g01502 | ATGGTTTATTCGAGGAAGTTCAGGGGAGTTAGGCAGCGGCAGTGGGGCTCGTGGGTGTCAGAAATCCGCCACCCATTGCTGAAAAGAAGGGTGTGGCTAGGGACATTCGACACAGCAGAGGATGCAGCACGAGCATATGATCAAGCATCCATCTTGATGAACGGCCAAAACGCCAAGACCAATTTCCCTGCATCGAAAGACCGATCTGAAGAAGCCAGCCATGGCCATAGCGCTTCTCCATTGTCCCCAAAAACACTCTCAGAGCTACTCAGCACAAAGCTCAGGAAGTGCTGCAAGAACCCTTCTCCCTCCTTGACATGCCTGCGACTCGACAGTGACAACGCCCACATCGGTGTCTGGCAGAAGCGCGCAGGCACTCGAGCAGCCTCTGATTGGGTCATGAGGATTGAGTTAGGAAAGAAGGAGACCCCGTCACCGTCAATGTCGCTGTCCCCGTTGCCCGAACCTGCAAGCCAGGAAGCTGAAGGCTGCCAAAATGGGATTGATGAAGAAGACAGAATTGCAATGCAAATGATCGAAGAGTTGCTTAGTTGGAACTGCCCCCTTCCTTCAACTTCAAGCTAG | 585 | 52.82 | MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKTNFPASKDRSEEASHGHSASPLSPKTLSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVWQKRAGTRAASDWVMRIELGKKETPSPSMSLSPLPEPASQEAEGCQNGIDEEDRIAMQMIEELLSWNCPLPSTSS | 194 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 10548202 | 10550079 | - | CmaCh01G015020.1 | Cma01g01502 | 287195 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g01502 | 194 | Pfam | AP2 domain | 6 | 55 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01502 | 194 | MobiDBLite | consensus disorder prediction | 142 | 164 | - | - | |
Cma01g01502 | 194 | MobiDBLite | consensus disorder prediction | 58 | 84 | - | - | |
Cma01g01502 | 194 | Gene3D | AP2/ERF domain | 5 | 65 | IPR036955 | GO:0003700|GO:0006355 | |
Cma01g01502 | 194 | CDD | AP2 | 6 | 65 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01502 | 194 | PRINTS | Ethylene responsive element binding protein signature | 7 | 18 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01502 | 194 | PRINTS | Ethylene responsive element binding protein signature | 29 | 45 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01502 | 194 | SUPERFAMILY | DNA-binding domain | 6 | 65 | IPR016177 | GO:0003677 | |
Cma01g01502 | 194 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 1 | 192 | - | - | |
Cma01g01502 | 194 | ProSiteProfiles | AP2/ERF domain profile. | 6 | 63 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01502 | 194 | SMART | rav1_2 | 6 | 69 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01502 | 194 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 | 1 | 192 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01502 | Cma-Chr1:10548202 | Cma01g01479 | Cma-Chr1:10416824 | 1.91E-30 | dispersed | |
Cma01g01502 | Cma-Chr1:10548202 | Cma11g00547 | Cma-Chr11:2624261 | 3.22E-71 | wgd | |
Cma01g01502 | Cma-Chr1:10548202 | Cma05g01293 | Cma-Chr5:9852901 | 1.02E-72 | wgd | |
Cma01g01502 | Cma-Chr1:10548202 | Cma09g00461 | Cma-Chr9:2028621 | 6.39E-124 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34345 | PF00847 | AP2 | 1.80E-12 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g01502 | - | - | mcha:111006480 | 345.125 |