Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01504 ATGGTTGATGAAGACGATGAATCTTGTGGTTTTCTTGTGTTTTGTGAGAGGAAAGTTGAGTGTAGTTTACAACAAATGATGGAATCGGAAATCCTTGTACCTGCTGATGGGCTCAAACTGACCCTTCAAAATGGGTTTCATGACCATATTTCTGACAACTCAGAGGACATCGTTGCAAAAGTTATAGTGAGCGAGGGCATAAGCAATGACGTCGGGGCTACAACTCAGCAAGGAAATATGGAAAATGATCTCAAATTGAGTGGCAGTGCAACTAATGATTCAAAGACTAGGGAACTCATGGAGGGATCAAGAGGGGAAAAGAATGTTGATCCTTCTAAGCAAGTAAAACCAGAGAAGGGTCAAATCAAGAGCAAAAATGAAAAGTCATCAGGCCCTAAACACATTCATTCGACAGGGGTGATTAAGAATAAACATGGAAAAGATTCGGAACAGACTGCTGCTCTTTTAAATGGTTCTACCTCAGGTACAGGTACAGGTACATCGCATCCACACTCGAAGCAGCATTATAAGAGTAGATCATTCAATGACAGGCAAGCTCAAGTGCCAAAGCAATCTGAGAAGTCTGATGGAGAAGGATCAAAGGAGAATACGAACTTGAAACCTTTGCAGAAAGGTCATCCTAGTAAGTCAGAAGAAGAATCAGAATCTTCTTTAAGTCCAAGAGCAGGGGATGAGAAACCACACAGGATTGGGAGACTTCCTAACTATGGTTTTAGTTTTAGATGCAATGAGCGTGCTGAGAAAAGAAAAGAGTTCTATTCGAAACTTGAGGAAAAGATACAAGCCAAGGAAGTAGAAAAGAATACTTTACAGGCAAAGTCCAAGGAAACTCAAGAGGCTGAGATTAAAATGTTTAGAAAGAGCTTGAACTTTAAAGCAACTCCCATGCCTAGCTTTTATCAGGAACCACCTCCACCCAAAGTAGAATTGAAAAAGATACCACCTACAAGAGCCAAGTCTCCCAAGCTTGGCCGAAAGAAGGGTTTGAGCCCGGCAGACACTTCGAGTAATGATGGTGGTGATTTTCGATCAGTTCGCTTAAGCCTTGATGAGAATGCGGCTCTGATTAATAATTCCAAGGGGGTCTCTCCTGCTCGTTCAGAGAAGCCTAAACGCAGGTCTCTTCCTAGACTGCCTTCTGAGAAAAGTGCACTATCTGGTGTCATAGCACATGCAGGAAAATCCTCTGCAATTAAGGTGAAAAATGCAGAGAAGCCTGCTGCTGCTGCAGCATCTACAATTGGAAAGAAAGAAGAAAAACGTGCATCAGAGAAGCCTGCGAGTTTACAAATGGTAGACGAAGAGAAAATTGCTCCCTCGGACACGACAAACAAAGTAGTAGCCTCTCTTAGCCAGGAAGAGAACGGAGTTGCAACAGCTGAGCCCAGTGAAACAGGGATCAATTCGGACGAAGAGGAGGCAGAGAATGAAGAAGAATATCATCAGCATCAGACGTCGGTGGAAGAAGCTGTAGAATTGGAGCAGCCATCAAGCATTTAA 1521 43.0 MVDEDDESCGFLVFCERKVECSLQQMMESEILVPADGLKLTLQNGFHDHISDNSEDIVAKVIVSEGISNDVGATTQQGNMENDLKLSGSATNDSKTRELMEGSRGEKNVDPSKQVKPEKGQIKSKNEKSSGPKHIHSTGVIKNKHGKDSEQTAALLNGSTSGTGTGTSHPHSKQHYKSRSFNDRQAQVPKQSEKSDGEGSKENTNLKPLQKGHPSKSEEESESSLSPRAGDEKPHRIGRLPNYGFSFRCNERAEKRKEFYSKLEEKIQAKEVEKNTLQAKSKETQEAEIKMFRKSLNFKATPMPSFYQEPPPPKVELKKIPPTRAKSPKLGRKKGLSPADTSSNDGGDFRSVRLSLDENAALINNSKGVSPARSEKPKRRSLPRLPSEKSALSGVIAHAGKSSAIKVKNAEKPAAAAASTIGKKEEKRASEKPASLQMVDEEKIAPSDTTNKVVASLSQEENGVATAEPSETGINSDEEEAENEEEYHQHQTSVEEAVELEQPSSI 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10562501 10566524 - CmaCh01G015040.1 Cma01g01504 287197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01504 506 MobiDBLite consensus disorder prediction 97 132 - -
Cma01g01504 506 MobiDBLite consensus disorder prediction 449 472 - -
Cma01g01504 506 MobiDBLite consensus disorder prediction 150 171 - -
Cma01g01504 506 PANTHER PROTEIN WVD2-LIKE 5-RELATED 27 478 - -
Cma01g01504 506 MobiDBLite consensus disorder prediction 299 506 - -
Cma01g01504 506 MobiDBLite consensus disorder prediction 71 96 - -
Cma01g01504 506 MobiDBLite consensus disorder prediction 71 245 - -
Cma01g01504 506 MobiDBLite consensus disorder prediction 212 238 - -
Cma01g01504 506 PANTHER PROTEIN WVD2-LIKE 4 27 478 IPR044833 GO:0008017
Cma01g01504 506 Pfam Targeting protein for Xklp2 (TPX2) domain 245 315 IPR027329 -
Cma01g01504 506 MobiDBLite consensus disorder prediction 421 438 - -
Cma01g01504 506 Coils Coil 250 287 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01504 - - - csv:101207396 597.045
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01504 Cma09g00459 CCT
Cma01g01504 Cma09g00459 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01504 Cma-Chr1:10562501 Cma06g00543 Cma-Chr6:2567329 1.79E-34 dispersed
Cma01g01504 Cma-Chr1:10562501 Cma09g00459 Cma-Chr9:2017485 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g483 . Blo12g01076 Bda01g00746 Bda03g00071 . . Bma04g00068 . . . Cma01g01504 . Car09g00402 . . . Cpe06g00341 . . . . . . . Cla05g01738 Cam05g1851 Cec05g1863 Cco05g1924 Clacu05g1841 Cmu05g1722 Cre05g1854 Cone4ag1784 Cone7ag1699 Cone17ag1020 Cone20ag0671 Lsi04g02130 Csa03g04336 Chy04g00366 . . Blo18g00025 Bda01g01001 . . Bpe04g00056 . . Sed05g1701 Cmo01g01561 Cmo09g00468 Cma09g00459 . . . . Cpe02g00451 Bhi09g02239 Tan01g3647 Cmetu04g2939 . Hepe01g2022 Mch11g0556 . . . . . . . . . . . Cme04g00408
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006493 2 1 1 1 2 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01504 Cma_Chr01 FPKM 103.509521 116.506027 110.114723 112.308128 110.781532 108.534332 116.647614 110.391937 110.970436 102.894852