Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01505 ATGCGGGCTTCGACATCGACACGACCAATCCAATCGCTTCGGTGTCTTCAATGGCCGCTCGTTGCCGAGGACACCAGTTTCCTTGCCATGGTTTTGAAGGTCACGTGGACTTCAATTGGACTTGCTCGCTTGGTTCTAGACAACTTCTTGCCCTGCTGGCCTACGCTTTTCGCTTGGAGCCAGCTGCAAGGAGAGATTCTAATGGAGCTTCAACTTGCGCTAGCACTTTATGTTCCTGATCGCACCAGAGGCTTCGACCTGAACAGAAATGCATGTGATAGAGATGTGTTTGGTTCAGATCCGAGGAGCTGTGTGTGTGAACAAAGCACGAGCCATGGTAGACACAAGCGTGGCTTTGAAGATGCTTTCTTTAAGTGCAAAGACTCGTCTAAAGATCTGTCTTTGCTGCTGTGGAGCGATCGCTCTAACAAGGAAGATGATGACAGAAAGGACACCAACCATAGAATTTCCTGTGCTATACACATGCTCGGTTCTGATCAGACACACAATCATTATTGGATGGAAGACAATGAAGACGATGGAATCGTTTTTAACCCAAAATATGTGAAGGTGAAGATGGAGGGAGTGGCAATAGCTAGAAAGATTGATGTGGGGCTGTATAGCTCTTATCAGACGCTGAAAACTGCCTTGATCAACATGTTTTCCAGTTCTTGCTATCAAAAGTGTGGGTATAGCAATGACAGCTTGACTCTCACCTATCAGGACAAAGAAGGAGATTGGATGCTTGCAGAAGATCTTCCATGGCAGATGCCCCCAAGACAAGGCTCTAGGCCTTTTGAATGTGTGAGAAGAGCTTGGCATTGTGAAAGACATCAACCCATTAGAGGTTCTCTCATTCAAGAGATTTTCAGGGTTGTGAGTCAAGTTCATTGCCCTGCTACCAAGAAGAACAAGGAATGGCAAGAGAAACTCCCCATTGTTGTTCTTAAAGCTGAGGAAATTCTGTATTCTAAAGCTGATTCTGAGGCTGAATACATGGATATTACTACACTATGGACCCGAATAAACGAAGCGATTAATACGATCATTCGGCTCGATGGGGACACCGAAACTGGGGAGTTTCTTCATCCTTGTATTGAAGCTGCTCTCTATTTGGGTTGTACGCCGAGAAGATCGTCGAGGAGTAACCGAGGTAGTAACCTGAGGGGCTACCTTACTTCCTGCTCTCCACAAGTCCTAGAAACATCATCTCACTACATCAACATCATTAGACCAGCTGTTTTGAGCTCATCTTGTACCATACCTGATGCCAGACCGAAAAGCCAAATCCATGTCGGTAATCCCATCGGAGTTAGCACGAACTCGAAATCCTCAACCGTATATAAGAACATTTGGCCATCAATCAGTAACCAACAGTTCCTTACAGAGACTGTTTCAGGATGGAACATGTTTTCTTTGTGTCCATTGTACAATGGAAGCCATCAGCACGAGCCCTGTATCAATATGCAACCTATGCCCCTCTACAACGGTCCAAGTTTCTCTGTTCCAGCTCCGTTTAAGTACTTCCATTCCAGTGAGCTGATTGCTACAAGGAACAACAAAGTTGATTCTGTTAATACTCTTCACGAGCAACAGAAAACAGCCTGCAATCTATCGTTGCGGTTGGGTCCTCTCTCCATTCCACATCCAAGCATCAACAACGGTCGATCCAAGTCGATCACAGACATCGGTGCTAACGACTCTCAAAACCAGATAATGAGTTCTTCCGGTCACCCGTTCCAACTAGACAAAACGCTTCCTTTCTTTCCTCTCCATGTTACATTAGATTCCCATTTGAAGGAGCAGAGTTTCAAGATGGACATTTAG 1827 45.37 MRASTSTRPIQSLRCLQWPLVAEDTSFLAMVLKVTWTSIGLARLVLDNFLPCWPTLFAWSQLQGEILMELQLALALYVPDRTRGFDLNRNACDRDVFGSDPRSCVCEQSTSHGRHKRGFEDAFFKCKDSSKDLSLLLWSDRSNKEDDDRKDTNHRISCAIHMLGSDQTHNHYWMEDNEDDGIVFNPKYVKVKMEGVAIARKIDVGLYSSYQTLKTALINMFSSSCYQKCGYSNDSLTLTYQDKEGDWMLAEDLPWQMPPRQGSRPFECVRRAWHCERHQPIRGSLIQEIFRVVSQVHCPATKKNKEWQEKLPIVVLKAEEILYSKADSEAEYMDITTLWTRINEAINTIIRLDGDTETGEFLHPCIEAALYLGCTPRRSSRSNRGSNLRGYLTSCSPQVLETSSHYINIIRPAVLSSSCTIPDARPKSQIHVGNPIGVSTNSKSSTVYKNIWPSISNQQFLTETVSGWNMFSLCPLYNGSHQHEPCINMQPMPLYNGPSFSVPAPFKYFHSSELIATRNNKVDSVNTLHEQQKTACNLSLRLGPLSIPHPSINNGRSKSITDIGANDSQNQIMSSSGHPFQLDKTLPFFPLHVTLDSHLKEQSFKMDI 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10569618 10576675 - CmaCh01G015050.1 Cma01g01505 287198

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01505 608 ProSiteProfiles PB1 domain profile. 186 270 IPR000270 GO:0005515
Cma01g01505 608 Pfam AUX/IAA family 183 257 IPR033389 -
Cma01g01505 608 Gene3D - 183 264 - -
Cma01g01505 608 SUPERFAMILY CAD & PB1 domains 185 257 - -
Cma01g01505 608 PANTHER HISTONE ACETYLTRANSFERASE 259 598 - -
Cma01g01505 608 PANTHER COACTIVATOR CBP, KIX DOMAIN-CONTAINING PROTEIN-RELATED 259 598 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01505 - - - csv:101219225 496.893
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01505 Cma12g00341 CCT
Cma01g01505 Cma12g00341 ECH
Cma01g01505 Cma05g00380 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01505 Cma-Chr1:10569618 Cma05g00380 Cma-Chr5:1673894 3.11E-62 dispersed
Cma01g01505 Cma-Chr1:10569618 Cma11g00532 Cma-Chr11:2553831 7.68E-17 wgd
Cma01g01505 Cma-Chr1:10569618 Cma05g00378 Cma-Chr5:1669573 6.99E-21 wgd
Cma01g01505 Cma-Chr1:10569618 Cma05g01281 Cma-Chr5:9785539 1.20E-65 wgd
Cma01g01505 Cma-Chr1:10569618 Cma09g00454 Cma-Chr9:1989365 6.43E-97 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g487 . . . . . . . . Cmo05g00381 Cmo12g00290 Cma01g01505 Cma05g00380 . Car12g00322 Sed03g1615 Cpe07g00299 . Bhi04g00945 Tan02g2728 Cmetu03g0290 . Hepe10g0246 . Lcy13g1794 Cla05g01736 Cam05g1850 . Cco05g1922 Clacu05g1838 Cmu05g1721 Cre05g1852 . . Cone17ag1018 Cone20ag0672 Lsi04g02127 Csa03g04334 Chy04g00368 Cme03g01611 Blo17g00019 Blo18g00023 . Bda13g01260 . . . Bma02g00023 Sed13g2022 . . . Cma12g00341 . Car05g00323 Cpe11g00325 Cpe02g00450 Bhi09g02236 Tan01g3645 Cmetu04g1471 . Hepe01g2020 . . Cla08g01338 Cam08g1800 Cec08g1379 Cco08g1507 Clacu08g1494 . Cre08g1281 Lsi08g01209 . Chy03g01116 Cme04g00410
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014588 0 1 0 0 0 0 1 1 0 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 0 20
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34346 PF02309 AUX_IAA 2.40E-17 CL0072 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01505 Cma_Chr01 FPKM 2.288879 2.721378 2.247975 2.072469 10.57949 11.094286 9.241821 1.546315 1.544611 1.239289