Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01513 ATGAAGCAGAGTATATCTGAGGCAGTATCTTCATCCACCACGGGATTGACGGAGCAATCTCAATCCTCCTCGTCGTCGTTGGCGACGTTGGAGAAGTCCCAATCCATATCGGCTGCGGCGGCGGCGGAGGATTTGGCAGTCGGGTCGAGAGATGGCGGCGGGGCGCAAGAAACGGTGACTGTCGATCGGCGGGGGGATTTCTCTGCCGTGTGTAGATGGACAGTACAAAATTTCCCGAGAATCAAGGCTAGGGCTCTATGGAGCAAGTACTTCGAGGTCGGAGGTTACGATTGCCGTCTGTTGATATATCCGAAGGGGGATTCCCAAGCGCTACCGGGGTATATTTCAATCTACCTTCAAATCGTGGACCCGCGCGGTACATCGTCGTCCAAATGGGATTGCTTTGCGAGCTATCGTTTGGCCATCGTCAACGTTCTCGATGATTCGAAGACCGTTCATCGGGATTCTTGGCATCGATTCTCTAGCAAGAAGAAATCTCACGGATGGTGCGATTTTACTCCCTCTTCCACCGTGTTTGATTCTAAGCTTGGCTATTTGTTTAATAATGAGTCCATTTTGATCACTGCTGATATTCTAATCCTCAATGAGTCTGTAAACTTTACCCGGGATAACAATGAGCCAGCCTCATCTATGATGATGGCATCATCGGTTGTTGCTTGCCCTGTGCCTGAGGTTCTCAGCGGCAAGTTCACCTGGAAAGTTCATAATTTTAGTTTGTTTAAAGAAATGATAAAAACCCAGAAAATAATGAGCCCCGTGTTCCCAGCTGGCGAGTGTAATTTGAGGATTAGCGTCTATCAGAGCTCAGTTAATGGGACTGAGTATTTATCAATGTGTCTAGAGAGCAAGGATACCGAAAAGACAGTAATATTACCTGATAGGAGTTGTTGGTGTTTGTTTCGGATGTCCGTGTTGAACCAGAAGCCTGCTTTGAATCACATGCATCGAGACTCATATGGGAGATTTGCAGCTGATAATAAGAGTGGGGATAATACCAGTTTGGGGTGGAATGACTACATGAAGATGTCTGATTTTGTTGGGCAAGATTCTGGTTTTTTAGTTGATGATACCGCTGTGTTTAGTACCTCTTTTCATGTGATCAAGGAGTTTAGTAGTTTTTCGAAGAATGGTGGATTAATTGGTGGTAGAAATGGGAGTGGAGTTAGGAAATCAGATGGTCACCTAGGCAAATTCACGTGGAGGATTGAGAACTTCACAAGGTTGAAGGATCTTTTGAAGAAGAGGAAGATTACAGGTCTTTGCATCAAGAGCAGGAGATTCCAGGTGGGGAATCGAGACTGTCGTCTTATTGTTTATCCTCGAGGGCAGTCTCAACCACCATGTCACCTTTCAGTCTTCCTTGAAGTTACGGATTCAAGAATCACTTCCAGTGAGTGGAGTTGTTTTGTGAGTCATCGGTTGTCAGTTGTGAACCAGAAGATGGAAGAGAAGTCTGTTACAAAGGAGTCCCAAAACCGGTACTCCAAAGCTGCAAAAGACTGGGGATGGCGTGAATTTGTCACACTTACTAGCCTCTTTGATCAGGACTCCGGTTTTCTCGTTCAGGATACTGTAATATTCTCAGCAGAGGTTCTTATATTAAAGGAGACATCTGTGATGCAGGATTTTATTGACCAAGACATGGAGACGACTGGTTCCAGCTCTGTGATGGATAAGGTAGCAAAAAAAAGTTCATTTACATGGAAAGTGGAGAACTTTTTGTCCTTCAAGGAAATAATGGAGACCCGTAAAATCTTTAGTAAATTCTTTCAAGCTGGTGGATGTGAGCTCCGCATTGGCGTCTATGAATCCTTTGACACCATTTGCATCTATCTTGAGAGTGATCAGTCTGTTGGCAGTGATCCAGATAAAAACTTTTGGGTTAGATACAAAATGGCCGTGGTGAATCAAAAATATCCAGCAAAAACTGTATGGAAGGAGTCTTCTATTTGTACAAAGACATGGAATAATTCAGTTTTGCAATTCATGAAGGTGTCAGATATGCTAGAGGCAGATGCGGGGTTTCTTGTAAGAGACACGGTGGTTTTCGTATGTGAAATATTGGATTGCTGCCCTTGGTTTGAGTTTTCAGATCTTGAGGTTTTGGCTTCAGAGGATGATCAGGATGCTTTGACTACTGATCCAGATGATCTCATTGATTCTGAAGACAGTGAAGGAATAAGTGGTGATGAAGAAGACATTTTTAGAAACCTTCTCTCTACAGCCGGATTTCATCTAACATATGGAGATAATCCTTCACAACCACAGGTCACTTTGCGAGAAAAACTTTTGATGGATGCTGGTGCAATTGCAGGCTTTCTTACTGGACTTCGTGTTTATCTTGATGATCCTGCTAAAGTTAAGCGCTTGCTTCTTCCTACTAAGCTATCCAGTAGCAATGATGGGAAAAAGGTCTCAAAGACAGATGAGTCTTCCCCCAGTTTAATGAATTTGCTTATGGGAGTCAAAGTTTTACAGCAGGCAATCATTGATTTACTCTTGGATATAATGGTCGAGTGTTGCCAACCTTCAGAAGGGGGCTCTGGGGACCATTTGGAAGCAAGTTCAAAGCCTTCCATTCCTAGCAGTGGAGCTACTACTACACCACTGGAAGGTGAAAATGAAAATGGAGCAATAGAGGCTGCAGATTGTCCTCCATTTCAGAGATTGGATACTGTTGATGAAAGTAGCAGTGCACCTGCTGTACAAAGCTCGGACATGATTAGAACTGATAGGGAGGGCAGGTCTCAACCTGAAGAGCTAATACATCCACCTGAGACATCTGCTGGGGTTTCAGAGAGTGTCTTCCTTCGTACAAAGACCAAGTGGCCTGAGCAATCTGAGGAGCTTTTAGGCTTGATTGTGAATTCATTGAGAGCCCTAGATGGGGCTGTCTCCCGAGGATGTCCTGAGCCAAAAAGACGGCCTCAATCTGCACAAAAGATGTCTCTTGTGCTGGATAAAGCTCCCAAGCATCTACAGTCTGACCTGGTTGCACTAGTACCCAAATTAGTTGAGCATTCAGAACATCCTTTGGCTGCTGGTGTGCTTCTAGAACGGCTTCAACAGCCCGGTGCTGAGCCAGCACTGCGGATACCTGTTTTTGGTGCTCTTAGTCAATTGGAGTGTGGTACTGAAGTTTGGGAACAGGTTCTATTTAAATCTATTGAGTTTTTAGCAGATTCAAATGATGAGCCTCTTGCTGCAACTATGGATTTTGTTTTCAAAGCTGGAGCTCAGTGCCAACATCTCTCTGAAGCAGTGAGATCTGTTCGTGTTAGGCTGAAGAATTTGGGCATGGATGTTTCCCCATGTGTTCTTGATTTATTAAGTAAAACAGTAAATAGCTGGGGTGATGTTTCTGATATTATACTCAGAGATATTGATTGTGATGATGATGCTGATGATTTCCACTCAAAGATATCACGTGAGCTTTTCTTATTTGGGGAACCTGGCCCTGCTTCAGAAAGTCTGCATCCGTTGGATGAGCAGGATTTACATGCTGCTCGTCATTTTTCTGATATTTATATCTTGATTGAGATGTTATCTATACCTTGTCTTGCCGTTGAAGCATCACAGACATTTGAGAGAGCTGTAGCTCGTGGTGCCATCACAGCTAAATCTGTTGCTGTGGTGTTGAAAAAACGTCTTGCTCAAAAAGCAAATAGCAATGCTAGATTCGTAGCTGAAAGCTTCCAGCATGGAGATTCTGTAATAGATGGTGAATCTAGTGAGCAGCTGAGAGTCCAGCGGGATGATTTTACTTCTATTGTTGGTCTTGCCGAAACATTAGCACTCTCTAGAGACCCTTGCGTTAGAGGATTTGTGAAAATGCTTTATCCATCATTGTTTAAGTGGTATGCAAGTGAATCTTATCGAGCCAGGATGCTGAAAAGATTGGTTGACCGTGTCACCAGCAGTGCAGATAATAACCGTGAAGTAGATATGGATTTGGAAATTTTGGTTACGTTAATTGGTGATGAACAAGAAATAATTAGACCTGTGCTAAATATGATGCGGGATGTTGCAGAACTAGCAAATGTTGACCGTGCTGCTCTCTGGCACCAGTTATGTGCTACTGAAGATGAAATCATCCGTATCCGTGAAGAAAGCAAAGTAGAAATTTCAAATATGATGAAAGAAAAAGCTGTTCTTTCACAAAAACTTGGTGAATCTGAAGCCATGATCAATCGCCTAAAGGCTGAGATGAAGGCTGAGATGGAGAGATTTTCTCGCGAGAGAAAGGAACTTTCTGAACAAATGCATGACATTGAGAGTCAGCTTGAGTGGCTTCGCTCTGAGCGAGATGATGAGGTTGTGAAGTTAACATCAGAGAAGAAAGTTCTCCATGATCGTCTCCATGATGCTGAGACTCAAATTGTGCAATTGAAATCCCGAAAACGTGAGGAGATGAAGAAAGTGGTTAAGGAAAAAAATGCACTTGCTGAGAGGTTGAAGAGTGCTGAAGCTGCTCGAAAAAGATTTGATGAACAACTGAAACGGTATGCAAATGAAAATATGACGAGGGAAGAAATCCGGCAGTCACTGGAAGATGAAGTTCGCCGGCTTACACAAACAGTTGGACAGACTGAAGGAGAAAAGAGGGAGAAGGAGGAGCAGATTGCTCGATGTGAAGCATATATTGATGGGATGGAAGCTAAATTGCAGGCCTGCCAGCAATATATCCATTCACTTGAAGCATCACTACAAGAAGAGATGTCCAGACATGCCCCTCTATATGGTGCTGGTTTGGAAGCTCTGTCAATGAAGGAGCTGGAGACATTATCCCGAATTCACGAAGAAGGATTAAGGCAAATCCATACTCTTCAGCAACGCAAAGGGAGTCCAGCAGGCAGTCCTCTCGTGAGCCCTCATTCCCTCGCTCACAGTCACGGGTTGTACTCTGCAGCACCTCCCCCGATGGCTGTCGGGATGCCTCCTTCACTCATGCCCAATGGCTCAGGGATCCACAGCAATGGACATGTGAATGGTGGTGCAGTTGGACCATGGTTCAACCATGCTTGA 5046 44.07 MKQSISEAVSSSTTGLTEQSQSSSSSLATLEKSQSISAAAAAEDLAVGSRDGGGAQETVTVDRRGDFSAVCRWTVQNFPRIKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISIYLQIVDPRGTSSSKWDCFASYRLAIVNVLDDSKTVHRDSWHRFSSKKKSHGWCDFTPSSTVFDSKLGYLFNNESILITADILILNESVNFTRDNNEPASSMMMASSVVACPVPEVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGTEYLSMCLESKDTEKTVILPDRSCWCLFRMSVLNQKPALNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFVGQDSGFLVDDTAVFSTSFHVIKEFSSFSKNGGLIGGRNGSGVRKSDGHLGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQVGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRITSSEWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVIFSAEVLILKETSVMQDFIDQDMETTGSSSVMDKVAKKSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQSVGSDPDKNFWVRYKMAVVNQKYPAKTVWKESSICTKTWNNSVLQFMKVSDMLEADAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDDLIDSEDSEGISGDEEDIFRNLLSTAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSSSNDGKKVSKTDESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEGGSGDHLEASSKPSIPSSGATTTPLEGENENGAIEAADCPPFQRLDTVDESSSAPAVQSSDMIRTDREGRSQPEELIHPPETSAGVSESVFLRTKTKWPEQSEELLGLIVNSLRALDGAVSRGCPEPKRRPQSAQKMSLVLDKAPKHLQSDLVALVPKLVEHSEHPLAAGVLLERLQQPGAEPALRIPVFGALSQLECGTEVWEQVLFKSIEFLADSNDEPLAATMDFVFKAGAQCQHLSEAVRSVRVRLKNLGMDVSPCVLDLLSKTVNSWGDVSDIILRDIDCDDDADDFHSKISRELFLFGEPGPASESLHPLDEQDLHAARHFSDIYILIEMLSIPCLAVEASQTFERAVARGAITAKSVAVVLKKRLAQKANSNARFVAESFQHGDSVIDGESSEQLRVQRDDFTSIVGLAETLALSRDPCVRGFVKMLYPSLFKWYASESYRARMLKRLVDRVTSSADNNREVDMDLEILVTLIGDEQEIIRPVLNMMRDVAELANVDRAALWHQLCATEDEIIRIREESKVEISNMMKEKAVLSQKLGESEAMINRLKAEMKAEMERFSRERKELSEQMHDIESQLEWLRSERDDEVVKLTSEKKVLHDRLHDAETQIVQLKSRKREEMKKVVKEKNALAERLKSAEAARKRFDEQLKRYANENMTREEIRQSLEDEVRRLTQTVGQTEGEKREKEEQIARCEAYIDGMEAKLQACQQYIHSLEASLQEEMSRHAPLYGAGLEALSMKELETLSRIHEEGLRQIHTLQQRKGSPAGSPLVSPHSLAHSHGLYSAAPPPMAVGMPPSLMPNGSGIHSNGHVNGGAVGPWFNHA 1681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10607303 10616758 + CmaCh01G015130.1 Cma01g01513 287206

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01513 1681 MobiDBLite consensus disorder prediction 898 940 - -
Cma01g01513 1681 ProSiteProfiles MATH/TRAF domain profile. 570 694 IPR002083 GO:0005515
Cma01g01513 1681 MobiDBLite consensus disorder prediction 1 28 - -
Cma01g01513 1681 Pfam MATH domain 76 200 IPR002083 GO:0005515
Cma01g01513 1681 Pfam MATH domain 583 690 IPR002083 GO:0005515
Cma01g01513 1681 Pfam MATH domain 434 540 IPR002083 GO:0005515
Cma01g01513 1681 PANTHER TRAF-LIKE FAMILY PROTEIN 31 1680 - -
Cma01g01513 1681 CDD MATH 572 694 IPR002083 GO:0005515
Cma01g01513 1681 MobiDBLite consensus disorder prediction 853 879 - -
Cma01g01513 1681 SUPERFAMILY TRAF domain-like 232 377 - -
Cma01g01513 1681 MobiDBLite consensus disorder prediction 862 879 - -
Cma01g01513 1681 Coils Coil 1389 1441 - -
Cma01g01513 1681 ProSiteProfiles MATH/TRAF domain profile. 234 371 IPR002083 GO:0005515
Cma01g01513 1681 ProSiteProfiles MATH/TRAF domain profile. 402 538 IPR002083 GO:0005515
Cma01g01513 1681 PANTHER TRAF-LIKE FAMILY PROTEIN 31 1680 - -
Cma01g01513 1681 CDD MATH 235 367 IPR002083 GO:0005515
Cma01g01513 1681 CDD MATH 403 538 IPR002083 GO:0005515
Cma01g01513 1681 SUPERFAMILY TRAF domain-like 69 206 - -
Cma01g01513 1681 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 67 213 IPR008974 GO:0005515
Cma01g01513 1681 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 400 558 IPR008974 GO:0005515
Cma01g01513 1681 SUPERFAMILY TRAF domain-like 403 544 - -
Cma01g01513 1681 SMART math_3 239 352 IPR002083 GO:0005515
Cma01g01513 1681 SMART math_3 407 519 IPR002083 GO:0005515
Cma01g01513 1681 SMART math_3 575 675 IPR002083 GO:0005515
Cma01g01513 1681 SMART math_3 70 178 IPR002083 GO:0005515
Cma01g01513 1681 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 231 377 IPR008974 GO:0005515
Cma01g01513 1681 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 559 696 IPR008974 GO:0005515
Cma01g01513 1681 SUPERFAMILY TRAF domain-like 570 695 - -
Cma01g01513 1681 MobiDBLite consensus disorder prediction 898 912 - -
Cma01g01513 1681 CDD MATH 72 198 IPR002083 GO:0005515
Cma01g01513 1681 ProSiteProfiles MATH/TRAF domain profile. 68 198 IPR002083 GO:0005515
Cma01g01513 1681 Coils Coil 1453 1561 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01513 - - - cmos:111446723 3169.02
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01513 Cma09g00443 CCT
Cma01g01513 Cma09g00443 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01513 Cma-Chr1:10607303 Cma02g01198 Cma-Chr2:7078875 1.14E-06 dispersed
Cma01g01513 Cma-Chr1:10607303 Cma09g00443 Cma-Chr9:1945351 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g501 . . . Bda03g00075 . . Bma04g00072 . . . Cma01g01513 . Car09g00391 . . . Cpe06g00327 . . . . . . . Cla05g01725 Cam05g1838 Cec05g1852 Cco05g1909 Clacu05g1825 Cmu05g1709 Cre05g1840 . . Cone17ag1011 . Lsi04g02117 Csa03g04321 Chy04g00379 . . . . . . Bpe04g00061 . . Sed05g1711 Cmo01g01566 Cmo09g00453 Cma09g00443 . . . . Cpe02g00443 Bhi09g02224 Tan01g3626 Cmetu04g2170 . Hepe01g2009 Mch11g0545 . . . . . . . . . . . Cme04g00422
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007058 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01513 Cma_Chr01 FPKM 9.625752 10.172473 9.817921 10.13532 8.268744 7.927868 8.961807 14.372059 13.111367 13.723469