Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01519 ATGGCTTCCCTCCTAAAGCTCTGCAACCCATTAATGGTAACTCGATTCTCTCCGATTTCAGTCTCTCAGGCGATTCTCCTCCGCAGAACTCGTCGCCATTTTCGTTTTCCGTTCTTCAAGTCCGCGAGATGTTTCACTACTTCTCTGAGCTTATCTCAGCATCCGGTTAATGAGGAGAATCACAAAGAAATCGGCGGCGTTCCGCGTCAGTGTACCTCGTCGGAACTCTGGCTGCACAACACAATGAGTAGGAAGAAGGAGCTGTTCAAGACCAAGGTTGAAGGTAAAGTGGGCATGTACGTGTGTGGTGTCACTGCCTATGATCTCAGCCATATTGGCCATGCGCGTGTTTATGTTACTTTCGATGTTCTATATAGGTATTTGAAGCATTTGGGATACGAAGTTCTTTATGTTCGCAATTTCACCGATGTGAATGACAAAATAATTGTTAGAGCAAATGAGTTGGGGGAAGATCCGCTTAATTTAAGTAAGCGTTACTATGAAGAATTCTGTCAAGATATGGTGTCTCTTCATTGCTTGCCACCTTCAGTTGAACCACGAGTTTCAGACCACATGCTCCAGATCATTGATATGATAAAACAGATTCTTGACAATGGATATGCCTATTGTGTTGATGGTGATGTGTACTTCAATGTGGACAAATTTCCAGAATATGGACTATTATCGGGACGAAAATTAGAGGATAATCGAGCTGGAGAGCGGGTTGCTGTGGACTCCAGGAAGGAGAACCCTGCTGATTTTGCATTGTGGAAGTCTGCAAAGGAGGGGGAGCCATTTTGGGAAAGTCCATGGGGTCCTGGAAGGCCTGGATGGCATATAGAGTGTAGTGCCATGAGTGCAACATATCTGGGGTATTCTTTTGATATACATGGTGGAGGGATGGATCTTGTCTTTCCCCACCATGAAAATGAAATTGCTTAG 942 44.59 MASLLKLCNPLMVTRFSPISVSQAILLRRTRRHFRFPFFKSARCFTTSLSLSQHPVNEENHKEIGGVPRQCTSSELWLHNTMSRKKELFKTKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVLYVRNFTDVNDKIIVRANELGEDPLNLSKRYYEEFCQDMVSLHCLPPSVEPRVSDHMLQIIDMIKQILDNGYAYCVDGDVYFNVDKFPEYGLLSGRKLEDNRAGERVAVDSRKENPADFALWKSAKEGEPFWESPWGPGRPGWHIECSAMSATYLGYSFDIHGGGMDLVFPHHENEIA 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10643119 10645347 + CmaCh01G015190.1 Cma01g01519 287212

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01519 313 Pfam tRNA synthetases class I (C) catalytic domain 90 313 IPR032678 -
Cma01g01519 313 PANTHER CYSTEINYL-TRNA SYNTHETASE 75 313 IPR024909 -
Cma01g01519 313 Gene3D HUPs 60 313 IPR014729 -
Cma01g01519 313 PRINTS Cysteinyl-tRNA synthetase signature 99 110 IPR024909 -
Cma01g01519 313 PRINTS Cysteinyl-tRNA synthetase signature 295 313 IPR024909 -
Cma01g01519 313 PRINTS Cysteinyl-tRNA synthetase signature 135 144 IPR024909 -
Cma01g01519 313 PRINTS Cysteinyl-tRNA synthetase signature 264 282 IPR024909 -
Cma01g01519 313 PANTHER CYSTEINE--TRNA LIGASE, CHLOROPLASTIC/MITOCHONDRIAL 75 313 - -
Cma01g01519 313 TIGRFAM cysS: cysteine--tRNA ligase 77 313 IPR015803 GO:0004817|GO:0005524|GO:0006423
Cma01g01519 313 SUPERFAMILY Nucleotidylyl transferase 75 313 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01519 K01883 CARS, cysS; cysteinyl-tRNA synthetase [EC:6.1.1.16] - csv:101210985 526.168
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01519 Cma-Chr1:10643119 Cma04g02010 Cma-Chr4:12523983 6.02E-127 dispersed
Cma01g01519 Cma-Chr1:10643119 Cma09g00438 Cma-Chr9:1914364 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g566 . . . . . . . . . . Cma01g01519 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00018 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0044423 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01519 Cma_Chr01 FPKM 1.457962 0.890633 1.01586 1.365606 9.708867 8.92826 9.724751 2.780901 3.022135 3.40699