Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01524 ATGCCCATTCAGAAACCTTTATTTTTGGCATACGGGATCCTCCACGCCATTGAATGCTATCGTTGTTCTAGTTTTCGAGTTCATGCTCTGCGATTCTCCTCTTCGTCTGCTCAGTCATGGCTGTCCACACCGGGAAAGCCACTCATAAAGTGGCCTTCACTGCCCGACCAGGCGGGAAGCTCGTTGCAATCGGAACCGGCCACAATTTCAAACCCTAACTCTGACACTGACCTGAAATCTGATGCACGTTATGCGCAGAATGACTTCTCTACCATTTCTGGCATCCTTTCCGATCACGGTGTTCGACCTGGTGCAGCGTTCGAGGATGCTTTGGACAGGACTGGAATTGTGCCGAGTTCGAGTTTGCTGGAGGCTGTATTCGATCATTTCGATTCGTCTCCCAAGTTATTGTATTCGCTGTTTCTCTGGGCTGCGAAGAAACCTGGATTTCGTCCCTCACCGGCATTGTTCAATTGTATGATCAACGTGCTGGCGAAGTCGAGGGCGTTTGATTCTGCTTGGTCTCTGATTATTCGTCGTCTTCGTGGAGATGGAGAATCCTCTTTGGTTTCTGTCGATGTCTTCGTGATATTGATCAGGCGGTACACTCGTGCAGGCATGGTTCAACCTGCAATTCGGACCTTCGAATTTGCTTGCAACCTAGAAACAATTTCAGGGACCAACTCGGAGAGTTTGTTTGAGATTTTATTAGATTCCCTCTGCAAAGAGGGCCATGTCAGGGTAGCTTCTGAGTACTTCAATAGGAAAAGAGAGTTGGATTTGAATTTCAAACCATCAATTCGAGCTTATAATATACTTCTAAATGGATGGTTTCGATCAAGAAAGCTCAAACATGCTGAGAGGCTCTGGTTTGAGATGAAAAAGAACAAAATATCACCTACAGTCGTTACGTATGGCACCCTTGTCGAAGGCTACTGTCGAATGCGTCGGGTCGAAATAGCCATTGAATTGGTGGATGAGATGAGGGGAGAAGGTATTGAGCCAAATGCAATCATATATAACCCAATAGTTGATGCCCTTGGGGAGTCTGGGAGGTTTAAGGAGGCATTGGGAATGATGGAGAGGTTCACGGTTCTCGAGCAAGGCCCTACGATCTCGACATACAATTCTCTTATTAAGGGTTATTGCAAGGCAGGAGATCTTTCAGGGGCTAGCAAGATCCTTAAGTTGATGATGAATAGAGGATTCACTCCCACCCCGACTACCTATAACTACTTCTTTAGATTCTTCTCAAAGTATGGGAAAATTGAGGAGGGTATGAACCTTTACAATAAAATGATTGAATCGGGATATACGCCCGATAAACTTACGTATCACCTGTTGCTGAAGATGTTGTGTGAAGAGGAGAGATTAAACCTTGCAGTTCAAGTTTGCAATGAAATGAAGGCTAGGGGGTTTGGCATGGACTTGGCTACAAGCACCATGTTAATTCATTTGCTTTGCAAGATGCATAAGTTTGAAGAGGCTTTCGCTGAATTCGAGCACATGATTTGTCGTGGAGTAGTTCCTCAATATCTAACTTTCTGCAGATTGCTTGATGAATTCTCAAAACGTGGATTGACAAAAATGGCATCAAAGCTACGAGGAATGATGTCTTCGGTTCCTCATTCAGAGAAGTTACCTGATACGTATAGTCAAGCTCCCGATTCCATCCGTGCTAGAAGAACATCTATTATGCGTAAAGCCGAGGCAATGTCTGAAATGTTGAAGGTCTGTAAAGACCCTAGGGAGCTTGTCAAACGCAGAAGTCCATCTGAAACTGCTGTGTTTAATGCAAATAGGTTGATAGATGATATCAAGAAGAAAGCCAACTCTGCGACTGTTTGTATTTAA 1854 44.44 MPIQKPLFLAYGILHAIECYRCSSFRVHALRFSSSSAQSWLSTPGKPLIKWPSLPDQAGSSLQSEPATISNPNSDTDLKSDARYAQNDFSTISGILSDHGVRPGAAFEDALDRTGIVPSSSLLEAVFDHFDSSPKLLYSLFLWAAKKPGFRPSPALFNCMINVLAKSRAFDSAWSLIIRRLRGDGESSLVSVDVFVILIRRYTRAGMVQPAIRTFEFACNLETISGTNSESLFEILLDSLCKEGHVRVASEYFNRKRELDLNFKPSIRAYNILLNGWFRSRKLKHAERLWFEMKKNKISPTVVTYGTLVEGYCRMRRVEIAIELVDEMRGEGIEPNAIIYNPIVDALGESGRFKEALGMMERFTVLEQGPTISTYNSLIKGYCKAGDLSGASKILKLMMNRGFTPTPTTYNYFFRFFSKYGKIEEGMNLYNKMIESGYTPDKLTYHLLLKMLCEEERLNLAVQVCNEMKARGFGMDLATSTMLIHLLCKMHKFEEAFAEFEHMICRGVVPQYLTFCRLLDEFSKRGLTKMASKLRGMMSSVPHSEKLPDTYSQAPDSIRARRTSIMRKAEAMSEMLKVCKDPRELVKRRSPSETAVFNANRLIDDIKKKANSATVCI 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10664833 10668262 - CmaCh01G015240.1 Cma01g01524 287217

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01524 617 MobiDBLite consensus disorder prediction 56 77 - -
Cma01g01524 617 Pfam PPR repeat family 265 314 IPR002885 -
Cma01g01524 617 Pfam PPR repeat family 444 489 IPR002885 -
Cma01g01524 617 Pfam PPR repeat family 370 415 IPR002885 -
Cma01g01524 617 Gene3D Tetratricopeptide repeat domain 415 588 IPR011990 GO:0005515
Cma01g01524 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Cma01g01524 617 PANTHER LEAF PROTEIN-LIKE 102 610 - -
Cma01g01524 617 Pfam PPR repeat 339 362 IPR002885 -
Cma01g01524 617 Pfam PPR repeat 235 258 IPR002885 -
Cma01g01524 617 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 102 610 - -
Cma01g01524 617 TIGRFAM PPR: pentatricopeptide repeat domain 303 337 IPR002885 -
Cma01g01524 617 TIGRFAM PPR: pentatricopeptide repeat domain 269 302 IPR002885 -
Cma01g01524 617 TIGRFAM PPR: pentatricopeptide repeat domain 374 406 IPR002885 -
Cma01g01524 617 TIGRFAM PPR: pentatricopeptide repeat domain 481 510 IPR002885 -
Cma01g01524 617 TIGRFAM PPR: pentatricopeptide repeat domain 409 441 IPR002885 -
Cma01g01524 617 TIGRFAM PPR: pentatricopeptide repeat domain 444 476 IPR002885 -
Cma01g01524 617 Gene3D Tetratricopeptide repeat domain 257 328 IPR011990 GO:0005515
Cma01g01524 617 Gene3D Tetratricopeptide repeat domain 121 256 IPR011990 GO:0005515
Cma01g01524 617 Gene3D Tetratricopeptide repeat domain 329 400 IPR011990 GO:0005515
Cma01g01524 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Cma01g01524 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 441 475 IPR002885 -
Cma01g01524 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Cma01g01524 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 476 510 IPR002885 -
Cma01g01524 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01524 - - - cmax:111480484 1216.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01524 Cma-Chr1:10664833 Cma03g00032 Cma-Chr3:295559 1.38E-06 dispersed
Cma01g01524 Cma-Chr1:10664833 Cma15g00654 Cma-Chr15:3113406 1.35E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g433 Blo01g01369 . . . . . . . . . Cma01g01524 . . . . . . . . . . . . . Cla05g01756 . Cec05g1882 . Clacu05g1862 Cmu05g1743 Cre05g1873 . . . . Lsi04g02154 . . . . . . . . . . . . Cmo01g01576 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002447 1 3 2 2 2 2 2 1 1 2 1 2 2 2 2 2 2 3 2 1 2 2 2 2 2 2 2 4 3 2 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01524 Cma_Chr01 FPKM 0.83029 0.755479 1.414675 1.99786 1.674352 1.702684 1.983248 2.691246 2.460221 2.758244