Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01526 ATGAGTACGGAAAACGTTGCTTTTGAAGTTGAAGAGTGCTCTGTCCGTATCACAAGGGCACGGGCAAAAGAGCTTAGCGAATCAGGAGGCATTCTATGCTCCTCAAAATCTTCTGGAGTTCAAATGCCAATTCTACGAGCTAACTCAAAAAGAATGGCATCTGATGATATTAAGATTTGTTCAATCTCTTCCAATGGCCTTCCTATTAAAAGAAGAGCAGTGCTCAAGGATGTGACTAACATTTCCACTAAAGGGTCTGATAGGAATTGCGGCAATGCTTCTAATGTTCGGGGTGCCAAACCAACTAGAAGAGTTTCTGCGAAGGCTAAGGCAAATGCACCTTTAAATGTTTCTGCAGGAGCAGAAGAAGATGCAAACACAAGATTAGCAGAGGATTTATCTAAAGTAAGGGTGGTAGAATCACAAGAGGTCTCTTCGCGAGAAACTTCAGACAAAAAAGAGAGAACAGTGCAAGCCATGTGTCCCAATAGCAGAGACTGTGGAGTTTCAGATATTACTCTCTCTGTATCTTCAGATGAATCTGTCCCTCAGCCAAATGAAAAAAATATGTCACCTGAACAATCGGCAGCATCTAAGGATAGAGGCATTATAAACATTGATTCGGACTCCAAATGTCTTCAATCATGCAGCATATATGCTCCAGACATATATGACAGGATACGTGTGGCGGAGCTTGATCAAAGGACCTCAACAAACTATATGGAACAGTTGCAGCAAGATATCACCGAAAAAATGCGAGGAATACTGGTTGATTGGATTGTAGAGGTCACTGAAGAATATAAGCTGGTTCCAGATACACTCTATCTCACTGTGAATATTATTGATCGTTTTCTCTCGCAAAATCATATGGAGAAAAAACGTCTGCAACTTTTAGGTGTTGCAAGTATGCTAATTGCATCGAAATATGAGGAGATCTGTGCACCGAGAGTGGAAGATTTCTGCTTCATTACTGATAATACTTACACAAAAGGAGAGGTAGTAGAAATGGAGAGTGAAGTTCTGAACCAACTGCACTTTCGTCTATCTGTTCCCACTACAAAGACATTTCTAAGGAGATTCATACAATCAGCTCATGCTTCTTACAAGGTTCCTTGCACTGAACTTGAGTTTTTGGCCAATTATTTAGCTGAGTTGAGTCTTGTTGAATACAGCTTCCTAAAGTTCCTTCCTTCTCTGATAGCCGCATCAGCCGTATTTCTTGCGAGATGGACACTTGACCAATCAGATCATCCCTGGAATCCAACTCTGGAGCACTATACATGTTACAACGCTTCTGAGCTGAAAACTGTAGTGCTTGCCCTCCAAGACTTGCAACTTAACACCAGTGGTTCCTCGCTAAATGCCATCCGTGAGAAGTATAAACAACCCAAGTTCAAATGCGTAGCGAAACTAACATCTACTCGATCGGTTCTATCACTATTCTGA 1446 41.42 MSTENVAFEVEECSVRITRARAKELSESGGILCSSKSSGVQMPILRANSKRMASDDIKICSISSNGLPIKRRAVLKDVTNISTKGSDRNCGNASNVRGAKPTRRVSAKAKANAPLNVSAGAEEDANTRLAEDLSKVRVVESQEVSSRETSDKKERTVQAMCPNSRDCGVSDITLSVSSDESVPQPNEKNMSPEQSAASKDRGIINIDSDSKCLQSCSIYAPDIYDRIRVAELDQRTSTNYMEQLQQDITEKMRGILVDWIVEVTEEYKLVPDTLYLTVNIIDRFLSQNHMEKKRLQLLGVASMLIASKYEEICAPRVEDFCFITDNTYTKGEVVEMESEVLNQLHFRLSVPTTKTFLRRFIQSAHASYKVPCTELEFLANYLAELSLVEYSFLKFLPSLIAASAVFLARWTLDQSDHPWNPTLEHYTCYNASELKTVVLALQDLQLNTSGSSLNAIREKYKQPKFKCVAKLTSTRSVLSLF 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10671557 10677002 + CmaCh01G015260.1 Cma01g01526 287219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01526 481 Pfam Cyclin, C-terminal domain 351 473 IPR004367 -
Cma01g01526 481 CDD CYCLIN 252 341 IPR013763 -
Cma01g01526 481 Pfam Cyclin, N-terminal domain 222 349 IPR006671 -
Cma01g01526 481 SUPERFAMILY Cyclin-like 214 348 IPR036915 -
Cma01g01526 481 CDD CYCLIN 349 441 IPR013763 -
Cma01g01526 481 Gene3D - 222 470 - -
Cma01g01526 481 Gene3D - 236 349 - -
Cma01g01526 481 PANTHER CYCLINS 49 481 IPR039361 -
Cma01g01526 481 ProSitePatterns Cyclins signature. 253 284 IPR006671 -
Cma01g01526 481 MobiDBLite consensus disorder prediction 176 198 - -
Cma01g01526 481 SMART cyclin_7 355 443 IPR013763 -
Cma01g01526 481 SMART cyclin_7 258 342 IPR013763 -
Cma01g01526 481 SUPERFAMILY Cyclin-like 350 473 IPR036915 -
Cma01g01526 481 SMART Cyclin_C_2 351 474 IPR004367 -
Cma01g01526 481 PANTHER CYCLIN-A2-4 49 481 - -
Cma01g01526 481 PIRSF Cyclin_A_B_D_E 35 480 IPR039361 -
Cma01g01526 481 MobiDBLite consensus disorder prediction 176 199 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01526 Cma-Chr1:10671557 Cma17g00828 Cma-Chr17:6501508 1.53E-142 dispersed
Cma08g00631 Cma-Chr8:3549982 Cma01g01526 Cma-Chr1:10671557 2.44E-85 dispersed
Cma01g01526 Cma-Chr1:10671557 Cma12g00306 Cma-Chr12:1560091 5.67E-136 wgd
Cma01g01526 Cma-Chr1:10671557 Cma09g00477 Cma-Chr9:2120521 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01526 K06627 - csv:101204275 779.63