Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01541 ATGTCGATGCCGTCGCCGTTGCCTTTTCTCATCCGGCGGCACTCAAGTGACGATTTAAAGAACTTGACGTCGGTTTCCAGCAGCCTCTTGCCCGCGTTTGGGACGGTTGTGAATGGTGGATACGCGCACCTGAATAAATTCGTGGTAGTTCCATATGACAGAAGATATCGGTGGTGGCAAACTTTCCTGGTGGTGTTAGTGGTGTACTCTGCGTGGGCATCTCCCTTTGAGCTTGCCTTCAAGAAAGTGGCAACTGGGTCTCTTTTACCCGTTGATCTATTGGTGGATGCATTCTTTGCCCTTGATATCGTGTTGACCTTTTTCGTCGCTTACTTGGATAAATCCACCTATCTCCTCGTTGACGATCATAAGAAGATAGCTGGACGTTACCTTACAAGCCTGTGGTTCCCCATGGACGTAGCCTCCACTCTTCCATTACAGGTAATACACAGAATTTTGACTGGAAAGATGTACCGCAGTGAGGCCTTCGGTTTCCTCAATTTACTTCGGTTCTGGCGACTAAGGCGTGTTGGTGAGCTCTTCACAAGGTTGGAGAAAGACATACGCTTTAGTTACTTCTTAACAAGACTCGCCAAACTAATTTGTGTTACACTGTTGGCAGTTCATTCAGCTGGTTGTTTCTACTATTGGCTAGCAGTTCATCATAAAGAGCCAGGAAATACATGGATTGGAGTTGAAGTTGAAGATTTTGAGAACAGGAATATCTGGGTTGGGTACACGTATTCGATATATTGGTCCATTGTCACACTTACTACTGTCGGTTATGGCGACTTGCATGCAGTTAATTTAGGGGAGAAGATTTTTAGCATCTGCTACATGCTATTCAACATTGGCCTCACATCTTATTTGATCGGAAACATGACAAATCTCATTGTTCATGGTGCTGTCCGAACATATATCATGAGGGATTCCATAAATGAGATACTGCGTTATGGAAGCAAGAATAGACTGCCAGAAGGCTTGAAAGATCAAATGTTGGCGCACATGCAGCTCAAGTTCAAGACAGCAGAGTTGAAGCAAGAAGAGGTGTTGGAGGATTTACCTAAAGCAATCAGATCCAGTATTGCCCAGCACCTTTTCGGACAAACAGTTGAGAGTGCATACTTATTCAAGGGGATCTCTGAAGATCTCATCGTTCAATTGGTATCTGCGATGAAAGCAGAGTACTTTCCACCTAAAGTTGATATCATAATACAAAACGAGATACCAACAGATTTCTACATTTTGGTGTCTGGATCAGTGGATATGATATCGTACAAGAATGGAAATGAACAGGTTTTGGCAAATCTGGAATCTCCACAGATGGCAGGGGAAATTGCTGTAATGTTGAATATTCCACAGCCATGTACAGTGAGAACTAAAAGACTCTCCCAAGTCATCAGGATCAGTCACCATCATTTTAAGCAAATTTTACAATCAAACAATGAAGATGGAAAAATCCTTCTCTCCAACTTCACTGAGCACTTGAAGGGGTTAAAAAGGGAGGAGCAAAACGAGATACCCTACTTTGCAGAATTTCTGGAAGACCTAAATACAGAGCGTACAGAGCCAAATGAGAAACAAAATCAAAGAGTACCTTATCATGGTGATAAAAAAATGGAAGGAAGACCAAAAGCATCGAAACAATTTCCACCTACAAATCCCATCAGGGTGATAATCCACGGGCACCATCCAGATGAAAGTACAGAAGACGGCAACAGTATGGGAAAACTGATACTTCTGCCTAAGTCAATTGAAAAACTTTTCGGATTGGCAGGGAAAAGATTTGGCAAGAGAGGGAGCTCAATTCTCATGGCTGATGGCTCTAAAATAGAGGACTTGAATGTTTTAAGAGAGGGTGATCATTTATTCTTTGTTTGA 1881 42.58 MSMPSPLPFLIRRHSSDDLKNLTSVSSSLLPAFGTVVNGGYAHLNKFVVVPYDRRYRWWQTFLVVLVVYSAWASPFELAFKKVATGSLLPVDLLVDAFFALDIVLTFFVAYLDKSTYLLVDDHKKIAGRYLTSLWFPMDVASTLPLQVIHRILTGKMYRSEAFGFLNLLRFWRLRRVGELFTRLEKDIRFSYFLTRLAKLICVTLLAVHSAGCFYYWLAVHHKEPGNTWIGVEVEDFENRNIWVGYTYSIYWSIVTLTTVGYGDLHAVNLGEKIFSICYMLFNIGLTSYLIGNMTNLIVHGAVRTYIMRDSINEILRYGSKNRLPEGLKDQMLAHMQLKFKTAELKQEEVLEDLPKAIRSSIAQHLFGQTVESAYLFKGISEDLIVQLVSAMKAEYFPPKVDIIIQNEIPTDFYILVSGSVDMISYKNGNEQVLANLESPQMAGEIAVMLNIPQPCTVRTKRLSQVIRISHHHFKQILQSNNEDGKILLSNFTEHLKGLKREEQNEIPYFAEFLEDLNTERTEPNEKQNQRVPYHGDKKMEGRPKASKQFPPTNPIRVIIHGHHPDESTEDGNSMGKLILLPKSIEKLFGLAGKRFGKRGSSILMADGSKIEDLNVLREGDHLFFV 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10763372 10771000 - CmaCh01G015410.1 Cma01g01541 287234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01541 626 PANTHER POTASSIUM CHANNEL AKT1 5 57 IPR045319 GO:0005249|GO:0006813
Cma01g01541 626 PANTHER POTASSIUM CHANNEL AKT1 57 625 IPR045319 GO:0005249|GO:0006813
Cma01g01541 626 SUPERFAMILY Voltage-gated potassium channels 51 299 - -
Cma01g01541 626 MobiDBLite consensus disorder prediction 520 552 - -
Cma01g01541 626 Pfam Ion transport protein 56 302 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cma01g01541 626 PRINTS EAG/ELK/ERG potassium channel family signature 92 102 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma01g01541 626 PRINTS EAG/ELK/ERG potassium channel family signature 103 112 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma01g01541 626 PRINTS EAG/ELK/ERG potassium channel family signature 246 263 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma01g01541 626 PRINTS EAG/ELK/ERG potassium channel family signature 272 283 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma01g01541 626 PRINTS EAG/ELK/ERG potassium channel family signature 290 299 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma01g01541 626 MobiDBLite consensus disorder prediction 520 545 - -
Cma01g01541 626 ProSiteProfiles KHA domain profile. 557 626 IPR021789 -
Cma01g01541 626 ProSiteProfiles cAMP/cGMP binding motif profile. 376 495 IPR000595 -
Cma01g01541 626 Pfam KHA, dimerisation domain of potassium ion channel 557 625 IPR021789 -
Cma01g01541 626 Gene3D - 58 300 - -
Cma01g01541 626 Gene3D Jelly Rolls 344 508 IPR014710 -
Cma01g01541 626 Pfam Cyclic nucleotide-binding domain 396 481 IPR000595 -
Cma01g01541 626 PANTHER POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG-RELATED 5 57 - -
Cma01g01541 626 PANTHER POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG-RELATED 57 625 - -
Cma01g01541 626 SMART cnmp_10 376 493 IPR000595 -
Cma01g01541 626 SUPERFAMILY cAMP-binding domain-like 305 495 IPR018490 -
Cma01g01541 626 CDD CAP_ED 376 489 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01541 Cma-Chr1:10763372 Cma10g00578 Cma-Chr10:2647001 2.17E-09 dispersed
Cma01g01541 Cma-Chr1:10763372 Cma09g00494 Cma-Chr9:2207121 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01541 K21867 - csv:101215177 1078.16