Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01546 ATGCCGGGGCTAACCTGCAATGCCTGTAACAAAGAATTTATAGACGCCGAGGAGCAAAAGCTTCACTACAAATCCGAATGGCATCGATACAATCTTAAGCGCAAGGTGGCTAATGTTCCTGGGGTTACAGAGGCATTATTCTTAGCTAGACAATCTGCTGCTGCTGCACAAGAGAATGCCAAATCAGAGACCGCAATGTCATACTCTTGTGGCCTTTGTAGCAAAGCTTATAGGAGTGCCCAGGCTCATGCCCAACATCTTAAATCCAAGAGTCACATCATCCGAGCTTCACAAGGAACACATGATCAAGAAGTTGAAAAGCCAATTATTAAGCCCCTTCCTCAGCGAATTTCTAATAGGGTGCCCAAACAAAATGAGGAAGAGAGTGAGGAGTGGGAAGAAGCTGATTCTGATGAAGACATGATCGATGAGAATGACGATGAGGGTGAGGACGATGATTCTGATGCCATTGAGATGGACTTGGATCCATCGTGCTGCTTCATGTGTGATTTAGAGCATGATACTATCGATAGCTGCATGGTTCACATGCATAAACAACATGGATTCTTTGTTCCTGATGTTGAATATTTGAAGGATCCGAAAGGCTTCCTTACATACCTCGGTCTGAAGGTGATGAGGGATTTTAGGTGTCTGTACTGCAACGATAATTGTCTTCCTTTTAGCAGCTTTGGAGCTGTTAGGAAGCATATGGAAGCGAAAAGCCATTGCAAAGTGCATTATGGCGATGGAGATGAGAACGAAGAAGTAGAATTGGAAGAATTTTATGACTACAGTAGCAGTTATGTGGATGGAAGTGGCAACCAGCTAGTAGCATCGGGGGATGGGGCCAGTTCTGTTCAGCTTGGTAGTGGTGGAGCTGAGCTCATCTTAGCTCAAAGAACTAGCGATCCGCAATCGACCAAAACGCTTGGTTCCAGGCAATTTCTACGTTATTATCGTCAAAAACCACGACCATCTCCTGCAAATGATGCAGCCATAACTGCTGCATTGGCAGCAAGGTACAAGAGCATGGGATTGGCAACTGTCCAGTCGAGGGAGAAGACGATCAGGACAAAGGTGATGAAAGAAATTAATCGAACCGGATTGGAAGCCATGCGTACCAAAGTCGGATTGAAGAACAACGTAATCCGAAACCTGCCTAATAATGTTCCATACTAG 1179 44.95 MPGLTCNACNKEFIDAEEQKLHYKSEWHRYNLKRKVANVPGVTEALFLARQSAAAAQENAKSETAMSYSCGLCSKAYRSAQAHAQHLKSKSHIIRASQGTHDQEVEKPIIKPLPQRISNRVPKQNEEESEEWEEADSDEDMIDENDDEGEDDDSDAIEMDLDPSCCFMCDLEHDTIDSCMVHMHKQHGFFVPDVEYLKDPKGFLTYLGLKVMRDFRCLYCNDNCLPFSSFGAVRKHMEAKSHCKVHYGDGDENEEVELEEFYDYSSSYVDGSGNQLVASGDGASSVQLGSGGAELILAQRTSDPQSTKTLGSRQFLRYYRQKPRPSPANDAAITAALAARYKSMGLATVQSREKTIRTKVMKEINRTGLEAMRTKVGLKNNVIRNLPNNVPY 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10788885 10791913 + CmaCh01G015460.1 Cma01g01546 287239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01546 392 Pfam Zinc-finger double-stranded RNA-binding 5 29 IPR022755 -
Cma01g01546 392 PANTHER ZINC FINGER PROTEIN 622 1 392 IPR040025 -
Cma01g01546 392 Pfam C2H2 type zinc-finger (2 copies) 166 267 IPR041661 -
Cma01g01546 392 SUPERFAMILY beta-beta-alpha zinc fingers 67 98 IPR036236 -
Cma01g01546 392 PANTHER ZINC FINGER PROTEIN-RELATED 1 392 - -
Cma01g01546 392 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Cma01g01546 392 SMART c2h2final6 68 92 IPR013087 -
Cma01g01546 392 SMART c2h2final6 164 187 IPR013087 -
Cma01g01546 392 SMART c2h2final6 4 28 IPR013087 -
Cma01g01546 392 SMART c2h2final6 215 242 IPR013087 -
Cma01g01546 392 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Cma01g01546 392 SMART ZnF_U1_5 65 99 IPR003604 GO:0003676|GO:0008270
Cma01g01546 392 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Cma01g01546 392 MobiDBLite consensus disorder prediction 128 155 - -
Cma01g01546 392 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Cma01g01546 392 MobiDBLite consensus disorder prediction 114 155 - -
Cma01g01546 392 SUPERFAMILY beta-beta-alpha zinc fingers 150 202 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01069 Cma-Chr9:5618308 Cma01g01546 Cma-Chr1:10788885 4.52E-06 transposed
Cma01g01546 Cma-Chr1:10788885 Cma09g00522 Cma-Chr9:2320813 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34349 PF12756 zf-C2H2_2 3.20E-24 CL0361 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01546 K14816 - csv:101219700 632.869