Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01557 ATGAGGATAAGCCCGTTCAATTGGGCAACTAGGGCTCAGAAGGGTGAATTCCATCATTTCCCTCCATTTTCGGAGTGTATGGAAATGGCTTTTAGATCATCAATGTTGAAGCTCTCGTTGTTTTCTTCTTCTCCGTCGCAATCTTTTCGTTTACGGTATTTGATTTCCACCTGTGCTACTCCGGCGCCGAGTATTTTCCGGTGCTGTTCCATTTCTACTGCTACTGATGGTAAGAAGGTAAAGAAGGCGAAGCAGAAGAAAACAAAGAACGTTAAGGCGAGTACCGCTGTTCCGAAATCATCCGAGTCTTCGTCTTCGTCTTTGAAATTGGCTTTGGTGAAGGAGAAAAGGAGGACTCGTTCCACTAAGGAGTTTGATGAGAAAGCTGTCCAGTTCGGGGATACTGCTGCTCACATTCCAGTGATGCTTGCGGAAGTATTGGACGTGTTTTCTGCTTCTTCCGGAAGGTCGCTTCGCTCCTTTGTAGATTGCACCGTCGGTGCCGGTGGACATTCCTCTGCTATAATTCAAGCGCATTCAGAGTTGAAATTTTACATGGGAATGGACGTCGATCCAATTGCACTTGATAAGGCTCAAGATCGGATTAGTGATCTTTTCTGCGAGGATTCTGATTTGAAAGTATATACCGTTCTGAAGAACTTCAAATATATGAAATTGCTACTGGCTGACTCAGATGAGAAACCTTTAGAACCTGGAGTTGATGGCATTTTGATGGATTTGGGCATGTCATCCATGCAGGTGGATGATCCTGAAAGGGGATTTAGTGTTCTTTCCGATGGTCCTCTTGATATGCGAATGGATCCTCAGGCAAGTCTAAAAGCAGAGGACATATTGAACAGCTGGCCGGAAATGGAAGTGGGGCGTGTGTTGCGTGTTTATGGAGAAGAAAGTAACTGGTACTCACTCCAAAATAAAATCGTAAAAGCTCGATCACAGGGTGGATTGCATACCACCAGTGAATTAGTGGATCTTATCCGGAAATCAACCCCTGGGATCAAAGGAGGAAGGCAAGGTTGGATAAAAACAGCAACCAGAGTATTCCAAGCTCTGAGGATTGCTGTGAATGACGAACTGAAGGTATTAGAAGACTCGCTTTATAGTGCTTTCGAGTGTCTGGCTCCAGGAGGCCGACTTGCAGTGATTTCCTTCCACAGTTTGGAGGATAGGGTTGTAAAACAAACATTTCTGGACATCATTAACATCCCCAAGACGGAAGGGTGGGATGAAGAAGAGGTGATTAGGGTGAATGATGATAATAATAGGGAGGAAAAAGAAGAAGAATGGATTAAGCAAACAGTAAAAGGTTCAAAAGGTAGAATACTCACAAAAAGACCAATAACTCCATCTGAAGAGGAAGAGAGGTTGAATCGGCGATGTAGGAGCGCTAAGCTGAGAGTAATTCAGAAAAATAATGCATTTTAA 1443 43.87 MRISPFNWATRAQKGEFHHFPPFSECMEMAFRSSMLKLSLFSSSPSQSFRLRYLISTCATPAPSIFRCCSISTATDGKKVKKAKQKKTKNVKASTAVPKSSESSSSSLKLALVKEKRRTRSTKEFDEKAVQFGDTAAHIPVMLAEVLDVFSASSGRSLRSFVDCTVGAGGHSSAIIQAHSELKFYMGMDVDPIALDKAQDRISDLFCEDSDLKVYTVLKNFKYMKLLLADSDEKPLEPGVDGILMDLGMSSMQVDDPERGFSVLSDGPLDMRMDPQASLKAEDILNSWPEMEVGRVLRVYGEESNWYSLQNKIVKARSQGGLHTTSELVDLIRKSTPGIKGGRQGWIKTATRVFQALRIAVNDELKVLEDSLYSAFECLAPGGRLAVISFHSLEDRVVKQTFLDIINIPKTEGWDEEEVIRVNDDNNREEKEEEWIKQTVKGSKGRILTKRPITPSEEEERLNRRCRSAKLRVIQKNNAF 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10819003 10824002 + CmaCh01G015570.1 Cma01g01557 287250

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01557 480 Pfam MraW methylase family 137 476 IPR002903 GO:0008168
Cma01g01557 480 SUPERFAMILY Putative methyltransferase TM0872, insert domain 259 362 IPR023397 GO:0008168
Cma01g01557 480 MobiDBLite consensus disorder prediction 83 102 - -
Cma01g01557 480 TIGRFAM TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 136 477 IPR002903 GO:0008168
Cma01g01557 480 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 138 476 IPR029063 -
Cma01g01557 480 Gene3D Vaccinia Virus protein VP39 138 474 IPR029063 -
Cma01g01557 480 PANTHER S-ADENOSYL-METHYLTRANSFERASE MRAW 116 477 IPR002903 GO:0008168
Cma01g01557 480 Hamap Ribosomal RNA small subunit methyltransferase H [rsmH]. 138 477 IPR002903 GO:0008168
Cma01g01557 480 Gene3D Putative methyltransferase TM0872, insert domain 257 363 IPR023397 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01557 K03438 mraW, rsmH; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] - csv:101221749 668.307
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00505 Cma-Chr9:2275341 Cma01g01557 Cma-Chr1:10819003 5.25E-29 transposed
Cma01g01557 Cma-Chr1:10819003 Cma09g00504 Cma-Chr9:2274223 1.26E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g267 . . . . . . . . . . Cma01g01557 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01604 . . . . . . Cpe02g00410 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011756 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01557 Cma_Chr01 FPKM 4.412817 4.935746 7.796983 7.591729 27.484621 25.661831 30.732895 7.838173 7.912872 7.494432