Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01558 ATGCCGCTTGGAGATAGAGCAGGCGATAAGAGCGAGTCTCGGTATTGCGGAGTCGAGACTGAATTTGATGACGATGTGCCTCAGCTCTTAATCTCAAATCTATCCTCTGGTGGATTTGATTTCGTCGTCGCACCTCTGATGAATCCATCCTATCGACCAAGCTTGGTGCAAAAAGAAAATGGTTGCTCTGCCGTTCTCCCATTTGCTGGATCAGACTTGATTTTAAGCCCTGCACAGTGGAGCAGCCACGTTGTTGGAAAAATTAGTTCTTGGATTGACTTAGATTCTGAAGATGAGATTTTACGAATTGATTCTGAGACAACTCTAAAGCAAGAGATTGCTTGGGCTTCTCATCTCTCTCTGCAGGCATGCCTTCTTCCAGCACCTAAGGGAACATCATATGCTAATTATGCTAGGTGTGTTCATCAGATTTTGCAGGGCCTTAATAACATGCAGTTGTGGCTCAGGATACCTCTGGTGAAGGTTGATGATGATTCTACAGATGCCAAATCTGAACATTTGGTTGATTCTTGGGATTTGTGGAACTCATTTCGTCTGCTTTGCGAGCACCACAGTCAGTTATCAGTTGCACTCGACATTTTGAGTACGTTGCCGTCACCAAATTCGCTTGGACGATGGTTTGGGGAGTCTGTCAGAGCAGCCCTTATTAGCACTGATTGTTTCTTGACTAATTCACGGGGTTATCCATGCCTGTCAAAGCGGCACCAGAAGTTGATTACTGGATTTTTCAATCATTCTATTCAGGTAGTTTTATCTGGGAAGGCATTGCACAACGTTTCAAGGGGAGGTACAGATTCACCTACTGGTCTCAACAAAAGTCCTGATGGTGTTCAGTCTCATCCCTTGAGGTGCTATTTAGATTATGTTGCTTTTCTTTACCAGAGAATGGACCCACTCCCTGAGCAAGAACGAATTGAGCTTGGATACAGGGACTTCTTACAGGCCCCTCTGCAACCTCTTATGGATAATCTAGAATCTCAAACTTATGAAACTTTTGAGAAAGACGCAGTCAAATACATTCAGTACCAACGTGCAATTGCTAAAGCTTTGAAAGATAGGGTACCAGATGATAAGGCGTCTTCAGTAACAACAGTATTGATGGTCGTAGGCGCAGGTCGTGGTCCTCTCGTTAGGGCAGCATTGCAGGCAGCAGAAGAAACAGACCGCAAACTGAAAGTCTATGCTGTGGAGAAAAATCCTAATGCAGTTGTAACTCTTAATTGTTTGGTTAGAATGGAGGGCTGGGAAAAAATTGTTACCATAATTTCCTGCGACATGCGTTCCTGGGAAGCTTCAGAGAAGGCTGATATTTTGGTGAGTGAGCTGCTGGGTTCTTTTGGCGACAACGAACTATCTCCTGAATGTCTTGATGGGGCCCAGCGATTCTTAAAAGAAGATGGCATTTCAATACCTTCTTCGTACACGAGTTTCCTCCAACCAATTACTGCCTCCAAGCTATACAATGATGTGAAGGCACATAAAGATGTGGTCCACTTCGAAACTGCCTACGTTGTCAAACTGCACAACGTAGCAAGACTCTCTCCTCCTCAGCCTGTCTTTACCTTTACTCACCCGAATAAAATATCGGAGGGAAGCAATGAACGGTATAAGAAGCTGGTGTTTGAGATACCCAACGATACTGGTGCAGCCATTATACATGGTTTTGGTGGTTATTTTGATGCGACTTTATACGGTGATGTTCATCTGGGCACTGAACCATCCACAGCCACGCCAAACATGTTCGCAATATTTTTCCCATTAAGGACTCCGATATGCGTGCGGCCGGGTTCTTCCGTACAAGTCCATTTTTGGCGTTGTTGTAATCCTAACAAGGTCTGGTACGAGTGGTGTGTGACGTCTCCCAGCCAGTCCCCGCTACATAACGTCAACGGCCGTTCATATTGGGTTGGCCTATAA 1938 44.94 MPLGDRAGDKSESRYCGVETEFDDDVPQLLISNLSSGGFDFVVAPLMNPSYRPSLVQKENGCSAVLPFAGSDLILSPAQWSSHVVGKISSWIDLDSEDEILRIDSETTLKQEIAWASHLSLQACLLPAPKGTSYANYARCVHQILQGLNNMQLWLRIPLVKVDDDSTDAKSEHLVDSWDLWNSFRLLCEHHSQLSVALDILSTLPSPNSLGRWFGESVRAALISTDCFLTNSRGYPCLSKRHQKLITGFFNHSIQVVLSGKALHNVSRGGTDSPTGLNKSPDGVQSHPLRCYLDYVAFLYQRMDPLPEQERIELGYRDFLQAPLQPLMDNLESQTYETFEKDAVKYIQYQRAIAKALKDRVPDDKASSVTTVLMVVGAGRGPLVRAALQAAEETDRKLKVYAVEKNPNAVVTLNCLVRMEGWEKIVTIISCDMRSWEASEKADILVSELLGSFGDNELSPECLDGAQRFLKEDGISIPSSYTSFLQPITASKLYNDVKAHKDVVHFETAYVVKLHNVARLSPPQPVFTFTHPNKISEGSNERYKKLVFEIPNDTGAAIIHGFGGYFDATLYGDVHLGTEPSTATPNMFAIFFPLRTPICVRPGSSVQVHFWRCCNPNKVWYEWCVTSPSQSPLHNVNGRSYWVGL 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10823214 10829522 - CmaCh01G015580.1 Cma01g01558 287251

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01558 645 Gene3D - 14 309 - -
Cma01g01558 645 Pfam PRMT5 oligomerisation domain 480 643 IPR035248 -
Cma01g01558 645 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 320 623 IPR025799 GO:0016274|GO:0018216
Cma01g01558 645 PIRSF PRMT5 3 645 IPR007857 GO:0006479|GO:0008168|GO:0035246
Cma01g01558 645 Gene3D Vaccinia Virus protein VP39 313 479 IPR029063 -
Cma01g01558 645 Pfam PRMT5 TIM barrel domain 38 301 IPR035247 -
Cma01g01558 645 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 5 1 645 IPR025799 GO:0016274|GO:0018216
Cma01g01558 645 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 1 645 - -
Cma01g01558 645 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 335 644 IPR029063 -
Cma01g01558 645 Pfam PRMT5 arginine-N-methyltransferase 309 477 IPR035075 -
Cma01g01558 645 Gene3D - 480 645 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01558 K02516 PRMT5, HSL7; type II protein arginine methyltransferase [EC:2.1.1.320] - csv:101221977 1204.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01558 Cma-Chr1:10823214 Cma09g00502 Cma-Chr9:2270252 1.18E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g264 . . . . . . . . . . Cma01g01558 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01605 . . . . . . Cpe02g00409 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010530 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01558 Cma_Chr01 FPKM 26.003298 25.39558 17.713818 17.632607 47.231346 44.711433 47.280651 38.230072 33.267887 34.368088