Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01568 ATGCAAATCCAAGACTTTCATTTTCTCCCCTTCTTTCTTCTTCTTCTTCTATCAACTGGCTGTTTTGCTAAGCTTCACCACAACTATTACCATAATTCATGCCCAAATGTTGAGTCCATTGTGAGAGCTGCAGTGAAGCAGAAATTTGAACAGACGTTTGTTACTGCTCCCGCCACTCTTCGCCTCTTTTTTCACGATTGCTTTGTTCGGGGTTGTGATGCTTCTGTGCTGCTTCATTCAAATAACCACACTTCTGAGAAAGACAATGCTGAGAATCTTTCGCTCGCCGGAGACGGGTTCGATACTGTTATCAAAGCTAAGGCTGCCGTCGATAGCGTGCCGGAATGTAAGAACAAGGTGTCTTGTGCTGACATATTGGCTCTTGCTACTAGAGATGTAGTAGCTTTGACGGGAGGACCGTCGTATGCAGTGGAGTTGGGAAGGCGAGACGGGCGGATCTCGACACGAAAGAGCGTTCGACACCATCTTCCTTTACCTGATTTTGGATTGGATCAGCTGAATGCCATGTTTGCAAGACATGGTCTATCTCAAACAGACATGATTGCTCTCTCAGGTGCACACACAATTGGGTTCTCACACTGCAAGCACTTCTCCAAAAGGCTATATAGCTTCCACAGCAAAAACCGAATCGACCCGACGTTCAATCCGAGCTACGTCGACGAGCTCAAGAGGGAATGCCCGAGGAACGTGGACCAGAGAATTGCTGTGGACATGGACTCGAGGTCGTCGTTCACGTTCGACAACGTGTACTTCAAGAACTTGCAGATGGGAAGAGGGCTGTTCACCTCAGACCAAGTGTTGTTCACGGATCCAAGATCAAGGGAAACAGTGAACTTATTTGCTTCCAACAATTCAGCCTTTGAAGAGGCTTTTGTGGCTGCAATGAAAAAGCTTGGGAGAGTGGGAGTCAAAACAAGAAACCAAGGGGAGATCAGAATCGACTGTTCTTCGGTGAACTAA 981 46.99 MQIQDFHFLPFFLLLLLSTGCFAKLHHNYYHNSCPNVESIVRAAVKQKFEQTFVTAPATLRLFFHDCFVRGCDASVLLHSNNHTSEKDNAENLSLAGDGFDTVIKAKAAVDSVPECKNKVSCADILALATRDVVALTGGPSYAVELGRRDGRISTRKSVRHHLPLPDFGLDQLNAMFARHGLSQTDMIALSGAHTIGFSHCKHFSKRLYSFHSKNRIDPTFNPSYVDELKRECPRNVDQRIAVDMDSRSSFTFDNVYFKNLQMGRGLFTSDQVLFTDPRSRETVNLFASNNSAFEEAFVAAMKKLGRVGVKTRNQGEIRIDCSSVN 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10860732 10862206 - CmaCh01G015680.1 Cma01g01568 287261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01568 326 ProSiteProfiles Plant heme peroxidase family profile. 24 326 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma01g01568 326 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma01g01568 326 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma01g01568 326 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma01g01568 326 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma01g01568 326 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma01g01568 326 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma01g01568 326 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma01g01568 326 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma01g01568 326 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma01g01568 326 PANTHER - 5 326 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma01g01568 326 Gene3D - 28 326 - -
Cma01g01568 326 SUPERFAMILY Heme-dependent peroxidases 25 326 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma01g01568 326 Pfam Peroxidase 41 290 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma01g01568 326 Gene3D Peroxidase, domain 2 164 305 - -
Cma01g01568 326 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma01g01568 326 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma01g01568 326 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma01g01568 326 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma01g01568 326 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma01g01568 326 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601
Cma01g01568 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Cma01g01568 326 PANTHER PEROXIDASE 5 326 - -
Cma01g01568 326 CDD secretory_peroxidase 24 325 IPR033905 GO:0004601|GO:0042744
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01568 Cma-Chr1:10860732 Cma07g01087 Cma-Chr7:5845558 7.86E-148 dispersed
Cma01g01568 Cma-Chr1:10860732 Cma03g00934 Cma-Chr3:6685302 2.63E-148 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01568 K00430 - csv:101218982 585.874