Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01575 ATGGCGGTCGATCTGATGAGTTTTCCGAAGATGGATGATCAGATGGCTATACAAGAGGCCGCCTCGCAAGGATTGAAGAGTATGGAGCATCTCGTTCGTCTTCTTTCTCACAAGCAACCTTCAAACCATGTCGATTGCTCTGATCTGACTGATGCGACCGTTTCGAAGTTCAAGAAAGTGATTTCGCTTCTCAATCGGACTGGCCACGCCAGGTTCCGGCGAGGTCCGGTATCTAATTCGACGTCTTCCTCCTCGTCCGGTTCAGTTCCTCAAAATCAGGCGATGAACATCACTCCTACTCCGTTTACTTCATCGGCGACGGTTTCTGCTCCGTCGTTCACCGCTCCAGTCACCGTCGCTCAGCCACTGACGAAGGTTACTGCGGCGGCGAACTTTCTCCAGTCGCAGCCTCAGAGTATGACTCTCGATTTCACTAGGCCGAATATTTTGAACTCTAACCCTAAGGGAACCGATTTGGAATTTTCTAAGGATACCTTCAGCGTCTCTTCGAGTTCTTCGTTTATGTCCTCTGCTATCACCGGAGACGGCAGCGTATCCAACGGGAAATTAGGAACCTCTATCTTTCTGGCACCGGCTCCGACTGCTTCCGGCGGAAAGCCGCCACTCTCGGCGCCGTCATACAAGAAGAGGTGCCACGAACACGATTATTCCGAAGATTTGTCCGGGAAATTCTCCGGTTCTACCTCTGCTTCCGGCAAGTGCCATTGCTCAAAGAGAAGGAAAAACCGTATGAAGAAGACGATCCGAGTCCCGGCGATTAGTTCCAAAATCGCCGATATTCCACCGGACGAGTACTCATGGAGAAAATACGGTCAGAAGCCGATCAAGGGATCTCCATACCCACGTGGATATTACAAGTGTAGCTCGATGAGAGGATGTCCAGCAAGGAAACACGTGGAGAGAGATCCTAATGATCCAGCGATGTTGATTGTAACGTACGAAGGAGAGCACCGCCATACACAGAGCTCCTTGCCGGAAAATATGGCCACCGGAGTAGCTTTAGTTTTTGAGTCAAGTTGA 1041 50.53 MAVDLMSFPKMDDQMAIQEAASQGLKSMEHLVRLLSHKQPSNHVDCSDLTDATVSKFKKVISLLNRTGHARFRRGPVSNSTSSSSSGSVPQNQAMNITPTPFTSSATVSAPSFTAPVTVAQPLTKVTAAANFLQSQPQSMTLDFTRPNILNSNPKGTDLEFSKDTFSVSSSSSFMSSAITGDGSVSNGKLGTSIFLAPAPTASGGKPPLSAPSYKKRCHEHDYSEDLSGKFSGSTSASGKCHCSKRRKNRMKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSSMRGCPARKHVERDPNDPAMLIVTYEGEHRHTQSSLPENMATGVALVFESS 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10882048 10884101 - CmaCh01G015750.1 Cma01g01575 287268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01575 346 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 7 345 IPR044810 GO:0003700
Cma01g01575 346 SUPERFAMILY WRKY DNA-binding domain 266 328 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma01g01575 346 SMART WRKY_cls 268 328 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma01g01575 346 MobiDBLite consensus disorder prediction 72 94 - -
Cma01g01575 346 Pfam WRKY DNA -binding domain 270 326 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma01g01575 346 Gene3D WRKY domain 247 321 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma01g01575 346 PANTHER WRKY TRANSCRIPTION FACTOR 17-RELATED 7 345 - -
Cma01g01575 346 ProSiteProfiles WRKY domain profile. 263 329 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma01g01575 346 MobiDBLite consensus disorder prediction 74 94 - -
Cma01g01575 346 Pfam Plant zinc cluster domain 215 266 IPR018872 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01575 Cma09g00530 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01575 Cma-Chr1:10882048 Cma01g01820 Cma-Chr1:12075582 4.90E-79 dispersed
Cma01g01575 Cma-Chr1:10882048 Cma09g00530 Cma-Chr9:2358729 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34350 PF03106 WRKY 5.70E-26 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01575 - - bhj:120087087 601.282