Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01578 ATGGACGCCGAGATGGAGGCGATGGCGCTTGGATTGGAGGATTCTGGGTGCCCATTTGTGCTAGTCATTAGGTCGAACACTTGGTGTGCACCAAAAGGAATTGGGTCAAAAGGGTTGATTGTGAGGGGGATGGTAGACCAAATCGGGATTCTATTCCACAAAGCGATCGGGGGGTTTCTGAGCCACTGCGGGTGGAACTCGATAATGGAGAGGTTGGCGGCGGCAGTGCCGATTCTGGCGTGGCCAATGATGTCGGAGCAGAAGCTGAATGAGAAATACATATCGGAAGGACTAGGCATTGGGATTGCGATTGAAAGAGGGGAAAATGGGGGCCGATATGCTTCTCGAGAAAAAATCAGTGCGAGTGTGAGAGAATTGATGATCGGAGAGAAGGGGAAGAGGGCGAGAGAAAGGGCCGGAGAATTGGCAAGGGTTGCCCAGCGGGCGGTGCAGGACGGCGGTTCGTCGGATGCGGCTCTGATGAAAAACTTGGAATTAAATTACGGAGGTTTTTCCTGCACGTTCATCGTCGTCTCCGATCTGTTCGTTACTTGGCAAAAAATGTCTCGTGTTTACGTTGGGAATTTGGACCCGAGGGTCTCTGAGCGCGAGCTGGAAGACGAATTTCGTGTATTTGGAGTTATTCGAAGTGTATGGGTTGCACGAAGACCCCCTGGTTATGCCTTTATAGATTTTGATGATCCCAGAGATGCACGGGATGCAATTCATGAATTAGATGGAAAGAATGGTTGGAGAGTTGAGCTTTCTCATAATTCTAGAGGTGGTGGTGGAGGTGGCCGAGGAGGGGGTCGTGGTCGTTCTGGGGGTTCTGATCTCAAATGCTATGAATGTGGTGAGCCAGGACATTTTGCTCGTGAATGTCGTTCACGTGGTGGTGGCGGCGGCGGCGGTGGTGCTGGAAGAAGACGTAGCCGCAGTCCACGGTACCGTCGGAGTCCAAGTTATGGTCGCAGGAGTTACAGTCCCCGTGGAAGATCTCCAAGACGCCGCAGCTTGTCACCTCGTGGGCGTAGCTATAGCAGATCACCTCCGTATCGTGGTAGAGAGGAGGTTCCTTATGCCAATGGAAATGGTGTAAAGGACCGCCGTCGGAGCAGGAGCTGA 1125 52.53 MDAEMEAMALGLEDSGCPFVLVIRSNTWCAPKGIGSKGLIVRGMVDQIGILFHKAIGGFLSHCGWNSIMERLAAAVPILAWPMMSEQKLNEKYISEGLGIGIAIERGENGGRYASREKISASVRELMIGEKGKRARERAGELARVAQRAVQDGGSSDAALMKNLELNYGGFSCTFIVVSDLFVTWQKMSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDGKNGWRVELSHNSRGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRSRGGGGGGGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNGVKDRRRSRS 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10902600 10908483 + CmaCh01G015780.1 Cma01g01578 287271

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01578 374 Gene3D - 275 338 - -
Cma01g01578 374 Pfam Zinc knuckle 280 295 IPR001878 GO:0003676|GO:0008270
Cma01g01578 374 SUPERFAMILY Retrovirus zinc finger-like domains 262 301 IPR036875 GO:0003676|GO:0008270
Cma01g01578 374 MobiDBLite consensus disorder prediction 292 374 - -
Cma01g01578 374 SMART c2hcfinal6 280 296 IPR001878 GO:0003676|GO:0008270
Cma01g01578 374 ProSiteProfiles Zinc finger CCHC-type profile. 280 296 IPR001878 GO:0003676|GO:0008270
Cma01g01578 374 Gene3D Glycogen Phosphorylase B; 3 151 - -
Cma01g01578 374 CDD GT1_Gtf-like 2 149 IPR002213 GO:0008194
Cma01g01578 374 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 5 96 IPR002213 GO:0008194
Cma01g01578 374 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 4 165 - -
Cma01g01578 374 MobiDBLite consensus disorder prediction 253 275 - -
Cma01g01578 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 260 IPR000504 GO:0003723
Cma01g01578 374 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1 189 366 - -
Cma01g01578 374 CDD RRM_SRSF3_like 190 258 - -
Cma01g01578 374 Gene3D - 183 260 IPR012677 -
Cma01g01578 374 SMART rrm1_1 190 256 IPR000504 GO:0003723
Cma01g01578 374 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 189 366 - -
Cma01g01578 374 SUPERFAMILY RNA-binding domain, RBD 188 275 IPR035979 GO:0003676
Cma01g01578 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 248 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01578 K12896 SRSF7, SFRS7; serine/arginine-rich splicing factor 7 - bhj:120087167 251.136
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01578 Cma09g00533 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01578 Cma-Chr1:10902600 Cma04g01717 Cma-Chr4:8643578 7.35E-62 dispersed
Cma01g01578 Cma-Chr1:10902600 Cma09g00533 Cma-Chr9:2376770 1.78E-110 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g661 . . . . . Bpe02g00223 . . . . Cma01g01578 . . . . . . . . . . . . . . . . . . . . Cone4ag1864 Cone7ag1771 . . . Csa03g04411 Chy04g00289 . . . . . . . . . . . . Cma09g00533 . . . . . . . . . . . . . . . . . . . . . . Cme04g00330
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001098 3 1 1 2 2 1 5 2 2 2 1 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 2 7 5 2 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01578 Cma_Chr01 FPKM 21.719606 23.992504 24.854742 24.454243 28.925344 28.671387 27.394894 30.426584 31.273993 36.959667