Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01579 ATGAACGAACGAACGAACAAAACAAGCATGGAATTGAAGAAAGGGAAATTCGTGAGGTTTTACTCCAATGAGAAGAAGAATCTTGAGCTTCCATGGGAGAAAAACGATGGTAAGAGGCGTTTTGAGTTCGCATTACCAGTTTTCAAAATGGGGACTGCTCCATTAACGAATGCGGTTGGGGATAAAGGTAAAATTAGTTCAGATTTAGGGAGATTCAAGATTTTTGTGGAGAATAATGAGGCACAACAGAAGTGGATTCTTAACCCTGAAAGTGAAACGATTCTGAGATGGAATAGGGTTTTTCTGTTCTCTTGTTTGACAGCTCTTTTCGTTGATCCTCTTTTCTTCTACCTTCCTTCAGTGATTCACCATAATAGATCGTCTTGTATGACTACTGATTTCAATTTGGGAATTGCCGTGACTGTTTTTCGCACTTTTGCCGATGTGTTCTATCTTTTTCATATGGTTTTGAAGTTCCGGATGGCTTATGTTTCACCTACTTCGAGAGTTTTTGGGAAAGGTGAACTTGTTACTGATCCAAAGAAGATTGCTAAACGTTACTTGAAGTCTGATTTCTGTATAGATCTGATTGCTTCTCTGCCTCTTCCTCAGATTATGATATGGTTTATAATGCCAGCAATTAGAAGCTCTCATGCAGACCATACAAGCAATACTCTCGTGTTAATAGTTCTGCTTCAGTACATTCCAAGGTTCTACCTGATCTTCCCGTTGAGTTCCCACATTATCAAAACTACTGGTGTTGTCACAAAGACTGCTTGGGCAGGAGCTGCTTATAACCTTGTATTGTATATGCTAGCTAGTCATATCTTAGGAGCAGCATGGTACTTACTGTCTGTGGAGCGCCATGCCATGTGCTGGAAGTTCACCTGCAGAAGGGAATTCAGTCCTATGAAATGCCATCTCGACTATCTCGATTGTGGTACTCTAAATGATGTCGACCGTAGGATATGGGAAGTAAATACAACAGTATTTGCCCAATGTTCTCCCGATGAAGATGTCGTTTTCAATTACGGGATATTTGCTAATGCAATCTCAAAAAACGTCATCTCGTTCGGGTTCATTCAAAAGTACTTCTACTGTCTTTGGTGGGGCTTACAGAACTTGAGTTCCTATGGTCAGGGTTTGGAGACAAGCACCTTCATAGGAGAGACTTCCTTTGCTATCCTCATTGCTATAATGGGTTTGGTCTTGTTTGCTCATTTGATTGGTAATATGCAGACTTATTTGCAATCCATCACTGTGAGACTGGAGGAGTGGCGGGTGAAGCGGCGAGACACGGAGGAGTGGATGAATCATCGGCAGCTCCCCGAAGATTTACAAGAACGTGTGCGGAGATTTGTTCAATATAAGTGGCTTGCAACGAGAGGAGTTGACGAAGAATCCATCTTACAAGCCCTTCCAACCGATCTTCGTCGAGATATTCAGCGTCACTTGTGCCTCGACCTTGTTCGACGCGTTCCTTTCTTTGCACAAATGGACGATCAGCTTCTCGACGCAATCTGCGAGCGATTAGCGTCGTCTTTATGTACGCAAGGCACGTTCATTGTTCGTGAAGGAGATCCTGTTACCGAGATGTTCTTCATCATCCGAGGAATGCTCGAGAGTTCCACGACAGATGGAGGAAGATCAGGTTTCTTCAATTCAATAACATTGAGACCTGGAGATTTTTGTGGAGAAGAGCTTCTCGCTTGGGCATTGCTACCAAAATCATCAATCAGCTTGCCATCTTCTACTAGAACAGTTAGAGCAATCACTGAAGTAGAAGCCTTTGCTCTTCGAGCTGAGGATCTCAAATTCGTAGCTAACCAGTTTCGACGTCTCCATAGCAAGAAGCTTCAACACACGTTTCGGTTTTACTCTTACCACTGGAGAACATGGGCTGCTTGCTTCATTCAAGCAGCATGGCGTCGGTTCAAGAGGAGAATCATAGCAAAGACACTCAGTATTCAGGAGTCTTTTTCGTTGAATCCCAAAAAGCCAATGGCTGATGAAGCCGAGCTAGAAGAGGAAGAACATAATCCACGATCTAATTATTCTCACGCAAAACAAAACCTCGGCGTCACGATATTGGCGTCGAGGTTTGCTGCAAACACACGTAGAGGAGCACAAAAGCTGAAGGATGTTAACTTAATGAAGCTGAGAAAGCCTGACGAGCCAGACTTTTCTGAAGAACCAGATGATTGA 2205 43.13 MNERTNKTSMELKKGKFVRFYSNEKKNLELPWEKNDGKRRFEFALPVFKMGTAPLTNAVGDKGKISSDLGRFKIFVENNEAQQKWILNPESETILRWNRVFLFSCLTALFVDPLFFYLPSVIHHNRSSCMTTDFNLGIAVTVFRTFADVFYLFHMVLKFRMAYVSPTSRVFGKGELVTDPKKIAKRYLKSDFCIDLIASLPLPQIMIWFIMPAIRSSHADHTSNTLVLIVLLQYIPRFYLIFPLSSHIIKTTGVVTKTAWAGAAYNLVLYMLASHILGAAWYLLSVERHAMCWKFTCRREFSPMKCHLDYLDCGTLNDVDRRIWEVNTTVFAQCSPDEDVVFNYGIFANAISKNVISFGFIQKYFYCLWWGLQNLSSYGQGLETSTFIGETSFAILIAIMGLVLFAHLIGNMQTYLQSITVRLEEWRVKRRDTEEWMNHRQLPEDLQERVRRFVQYKWLATRGVDEESILQALPTDLRRDIQRHLCLDLVRRVPFFAQMDDQLLDAICERLASSLCTQGTFIVREGDPVTEMFFIIRGMLESSTTDGGRSGFFNSITLRPGDFCGEELLAWALLPKSSISLPSSTRTVRAITEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRFKRRIIAKTLSIQESFSLNPKKPMADEAELEEEEHNPRSNYSHAKQNLGVTILASRFAANTRRGAQKLKDVNLMKLRKPDEPDFSEEPDD 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10909946 10914271 + CmaCh01G015790.1 Cma01g01579 287272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01579 734 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 62 731 - -
Cma01g01579 734 SUPERFAMILY Voltage-gated potassium channels 93 417 - -
Cma01g01579 734 Gene3D - 94 421 - -
Cma01g01579 734 CDD CAP_ED 495 626 IPR000595 -
Cma01g01579 734 Pfam Ion transport protein 97 422 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cma01g01579 734 SMART cnmp_10 495 626 IPR000595 -
Cma01g01579 734 MobiDBLite consensus disorder prediction 668 684 - -
Cma01g01579 734 Gene3D Helix hairpin bin 423 486 - -
Cma01g01579 734 SUPERFAMILY cAMP-binding domain-like 425 617 IPR018490 -
Cma01g01579 734 Gene3D Jelly Rolls 493 613 IPR014710 -
Cma01g01579 734 ProSiteProfiles cAMP/cGMP binding motif profile. 495 625 IPR000595 -
Cma01g01579 734 MobiDBLite consensus disorder prediction 667 686 - -
Cma01g01579 734 Pfam Cyclic nucleotide-binding domain 518 606 IPR000595 -
Cma01g01579 734 MobiDBLite consensus disorder prediction 712 734 - -
Cma01g01579 734 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 62 731 - -
Cma01g01579 734 MobiDBLite consensus disorder prediction 712 727 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01579 Cma-Chr1:10909946 Cma10g00428 Cma-Chr10:1952298 0 dispersed
Cma03g01233 Cma-Chr3:8164935 Cma01g01579 Cma-Chr1:10909946 0 dispersed
Cma01g01579 Cma-Chr1:10909946 Cma11g00421 Cma-Chr11:2074262 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01579 K05391 - csv:101211072 1234.17