Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01581 ATGATGCCTCTTCTCACTACACAGTTCCTCCAATTCAACTGCCCAAAATTGTGTGTTTCAGAAATGGCACCGAGATTGGGGTTTTTGTGTTGGTGGGGAACGGAGAAGGACTCTCAAAAGGGAACTCCGGTGGTTGTGACGATGGAGAAACCCAACTTCTCCGTCGTTGAGATCGACGGTCCTGACGCCGCATTCCGGCCGGTGGAAAAAAGTAGAGGCAAAAATGCTAAACAAGTCACATGGGTTCTTCTTTTAAAAGCCAATCGAGCTGTCGGTTGCATTACTTGGCTTGTTACAGTCCTCTGGGCCTTATTGGGAACAATCAAGAAGAGGCTGATCTACAGGCAAGGAGTCGCCATTGAAGGCGGGAAGTTGGGAAGAGGGAGGTTACTGTTTGGAGTTATTAGAGCTTTCTTAGTGACTTCCATGGCGATTCTTGCTTTTGAAATGCTTGCTTATTTCAGAGGCTGGCATTATTTTCAGAACCCTAATCTCCACATTCCTCAGGCTTCTGATTTGCAAGGATTGCTTCATTCACTCTATGTTGCTTGGTTAACTTTTAGAGCAGACTACATTGCTCCTCTCATTCAAACACTCTCTAAATTTTGCATTGTTTTGTTCCTTATCCAATCAGTGGATCGTATGATCCTTTGTTTTGGTTGCTTGTGGATAAAGTGCAAAAGAATTGAACCCAAGATTCAAGGGGATCCCTTCAGGTTGGATGATGTGGAGGGAGCTGGACACAAGTATCCAATGGTTCTTGTTCAAATTCCCATGTGCAACGAGCGCGAGGTTTACGAGCAGTCTATCTCTGCAGTCTGTCAGATCGATTGGCCAAGGGACCGTTTACTAATTCAAGTTCTTGATGATTCTGATGATGAGAACATTCAAGTGCTAATTAAGGCAGAGGTTGCTAAATGGAGCCAGAAGGGAGTGAACATAATCTATCACCATCGATTAATAAGAACAGGATATAAAGCTGGGAATCTCAAGTCTGCAATGAGTTGTGACTATGTTAGAGACTATGAATTTGTAGCAATTTTTGATGCTGACTTTCAACCAAATCCAGATTTTCTTAAACTCACAGTTCCTCATTTCAAGGATAACCCGGAGCTCGGTTTGGTTCAGGCCAGATGGTCTTTCGTGAACAAGGATGAAAACTTGCTGACACGTCTTCAGAACATTAACTTGTGTTTCCACTTTGAGGTAGAACAGCAGGTTAATGGAGTGTTTCTTAATTTCTTCGGTTTCAATGGCACTGCTGGTGTTTGGAGAATTAAAGCCCTCGAGGAGTCCGGAGGATGGCTCGAAAGAACAACAGTAGAGGATATGGATATAGCTGTGAGAGCCCATCTTAACGGCTGGAAATTTGTATTTCTAAACGACGTTAAGGTTCTTTGCGAAGTTCCCGAGTCGTATGAAGCATATAGGAAGCAGCAACATCGTTGGCATTCCGGTCCTATGCAACTATTCAGGTTGTGTCTTCCAGCAATCATAAGTTCTAAGATAGCAGCATGGAAAAAGGCAAATTTGATACTGATTTTCTTTCTATTAAGGAAGCTCATCCTTCCCTTCTATTCCTTCACGTTGTTCTGCATAATTCTTCCTCTAACCATGTTCGTACCCGAAGCCGAGCTTCCTCTATGGGTAGTCTGCTACGTGCCCGTTTTCATGTCCTTACTCAACATCCTTCCATCCCCAAAATCTTTTCCTTTTATCATCCCCTACCTTCTTTTCGAGAATACTATGTCTGTCACCAAATTCAATGCCATGGTATCTGGCTTATTCCAGCTCGGTAGCTCTTATGAGTGGATTGTGACTAAAAAAGCTGGCCGGTCCTCCGAATCCGACTTACTGGCTACTGCTGAAAGGGACTCGAAGGTAATGAATCAAGCGCTGATCTATAGAGGCGCTTCTGAGAGCGAGCTTTCTGAGTTGAGCCACTTAAAGGAATGCGAAAAAGTAGTCGCTGCACCTGTCAAAAAAGTTAACAAGATATATCGGAAAGAGCTAGCGCTCGCGTTTCTTTTACTTTTAGCTTCACTCAGGAGTCTCTTGGCTGCACAAGGAGTCCACTTCTACTTCTTGATGTTCCAAGGTGTGACCTTCCTCCTTGTAGGCCTTGATCTAATTGGAGAGCAAATGAGCTAA 2151 43.75 MMPLLTTQFLQFNCPKLCVSEMAPRLGFLCWWGTEKDSQKGTPVVVTMEKPNFSVVEIDGPDAAFRPVEKSRGKNAKQVTWVLLLKANRAVGCITWLVTVLWALLGTIKKRLIYRQGVAIEGGKLGRGRLLFGVIRAFLVTSMAILAFEMLAYFRGWHYFQNPNLHIPQASDLQGLLHSLYVAWLTFRADYIAPLIQTLSKFCIVLFLIQSVDRMILCFGCLWIKCKRIEPKIQGDPFRLDDVEGAGHKYPMVLVQIPMCNEREVYEQSISAVCQIDWPRDRLLIQVLDDSDDENIQVLIKAEVAKWSQKGVNIIYHHRLIRTGYKAGNLKSAMSCDYVRDYEFVAIFDADFQPNPDFLKLTVPHFKDNPELGLVQARWSFVNKDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFVFLNDVKVLCEVPESYEAYRKQQHRWHSGPMQLFRLCLPAIISSKIAAWKKANLILIFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPLWVVCYVPVFMSLLNILPSPKSFPFIIPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKAGRSSESDLLATAERDSKVMNQALIYRGASESELSELSHLKECEKVVAAPVKKVNKIYRKELALAFLLLLASLRSLLAAQGVHFYFLMFQGVTFLLVGLDLIGEQMS 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10915923 10919118 - CmaCh01G015810.1 Cma01g01581 287274

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01581 716 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 243 470 IPR029044 -
Cma01g01581 716 SUPERFAMILY Nucleotide-diphospho-sugar transferases 250 530 IPR029044 -
Cma01g01581 716 Pfam Glycosyl transferase family group 2 345 547 IPR001173 -
Cma01g01581 716 PANTHER - 34 716 - -
Cma01g01581 716 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 5-RELATED 34 716 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01581 - - - csv:101217415 1281.93
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01581 Cma09g00534 CCT
Cma01g01581 Cma09g00534 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01581 Cma-Chr1:10915923 Cma15g00318 Cma-Chr15:1478058 0 dispersed
Cma01g01581 Cma-Chr1:10915923 Cma09g00534 Cma-Chr9:2381792 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g659 . Blo12g00999 . Bda03g00159 . Bpe02g00225 . Bma01g02228 . . Cma01g01581 . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g04414 Chy04g00287 . . . . . . Bpe04g00141 . . Sed13g2106 . . Cma09g00534 . . . . . Bhi09g02382 Tan01g3749 Cmetu04g0694 . Hepe01g2097 Mch11g0635 . . . . . . . . . . . Cme04g00326
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma02g00430 CST 220 380 REM Transcription Factor Family AT1G49480 72.0 8.2e-58 221.1
Cma20g00883 CST 176 338 REM Transcription Factor Family AT1G49480 69.9 1.2e-56 217.2
Cma01g01581 CCT,ECH 22 716 REM Transcription Factor Family AT2G24630 77.9 0.0e+00 1094.7
Cma09g00534 CCT,ECH 1 695 REM Transcription Factor Family AT2G24630 76.3 0.0e+00 1075.1
Cma15g00318 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 9.5e-267 916.8
Cma04g02723 CST 4 662 REM Transcription Factor Family AT2G24630 69.0 1.2e-264 909.8
Cma09g00311 CCT,CST 1 704 REM Transcription Factor Family AT2G24630 64.8 1.5e-264 909.4
Cma01g01758 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.4 3.4e-264 908.3
Cma12g00615 CCT 5 700 REM Transcription Factor Family AT2G24630 65.2 2.8e-258 888.6
Cma17g01291 . 5 694 REM Transcription Factor Family AT2G24630 61.5 9.6e-243 837.0
Cma08g00245 . 5 664 REM Transcription Factor Family AT2G24630 58.6 1.9e-222 769.6
Cma01g01581 CCT,ECH 22 716 REM Transcription Factor Family AT2G24630 77.9 0.0e+00 1094.7
Cma09g00534 CCT,ECH 1 695 REM Transcription Factor Family AT2G24630 76.3 0.0e+00 1075.1
Cma15g00318 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 9.5e-267 916.8
Cma04g02723 CST 4 662 REM Transcription Factor Family AT2G24630 69.0 1.2e-264 909.8
Cma09g00311 CCT,CST 1 704 REM Transcription Factor Family AT2G24630 64.8 1.5e-264 909.4
Cma01g01758 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.4 3.4e-264 908.3
Cma12g00615 CCT 5 700 REM Transcription Factor Family AT2G24630 65.2 2.8e-258 888.6
Cma17g01291 . 5 694 REM Transcription Factor Family AT2G24630 61.5 9.6e-243 837.0
Cma08g00245 . 5 664 REM Transcription Factor Family AT2G24630 58.6 1.9e-222 769.6
Cma01g01581 CCT,ECH 22 716 REM Transcription Factor Family AT2G24630 77.9 0.0e+00 1094.7
Cma09g00534 CCT,ECH 1 695 REM Transcription Factor Family AT2G24630 76.3 0.0e+00 1075.1
Cma15g00318 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 9.5e-267 916.8
Cma04g02723 CST 4 662 REM Transcription Factor Family AT2G24630 69.0 1.2e-264 909.8
Cma09g00311 CCT,CST 1 704 REM Transcription Factor Family AT2G24630 64.8 1.5e-264 909.4
Cma01g01758 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.4 3.4e-264 908.3
Cma12g00615 CCT 5 700 REM Transcription Factor Family AT2G24630 65.2 2.8e-258 888.6
Cma17g01291 . 5 694 REM Transcription Factor Family AT2G24630 61.5 9.6e-243 837.0
Cma08g00245 . 5 664 REM Transcription Factor Family AT2G24630 58.6 1.9e-222 769.6
Cma02g00430 CST 220 380 REM Transcription Factor Family AT1G49480 72.0 8.2e-58 221.1
Cma20g00883 CST 176 338 REM Transcription Factor Family AT1G49480 69.9 1.2e-56 217.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006307 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01581 Cma_Chr01 FPKM 6.264528 7.340272 7.942522 6.983049 22.34169 17.9445 21.574121 5.378797 4.5538 5.438879