Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01587 ATGCAATGCGGGCTGAGCTTTATAATCATGGTGTTTTGGGTATTTGGATATGGCTCACTGGTGTGGAACCCAGGATTTGAATTTGATGAGAAAATTGTAGGTTACATCAAGGATTATAAGCGCGTATTCGACCTCGCATGCATTGATCACAGAGGTACGCCAGAAAATCCTGCTAGAACTCTCACGTTGGAACAGGAAGAAGGAGCTATTTGTTGGGGAGCAGCTTTCTGTGTGCGGGGGAGTCCTGAAAGGGAACGAGCAGCTATGGAATATTTGGAGCAGAGAGAGTGTGAATATGATCAAAAGACATTGGTTAACTTCTACAAGGAAGTGGACTCTCTTGAGCCAGCGCTTACAGGAGTCATTGTTTTCACGTCGACTCCCGACAAAGAAGTGAACAAATACTACCTTGGTCCAGCTCCATTAGAGGACATGGCTAGACAAATTGCAACTGCTTCTGGGCCTTGTGGAAACAATAGAGATTATATTTTCATGTTAGAGAAGGCATTGTCACGAGGAGGAAATGGTGATCGAGCTCGCGAACGAGGTGAGAAAGGTTCTCGATCTCCTCGAGAATGGAATCTCGATGGAGAACAAGCTGCTCGGAGCAGCGCCCCACGTAGTAGTACTCAACCCGCACTTACCGTCCTTAGAACTGCAACCACTTCCAGAAGCCATAGCCACAGATTCGTGATTCCGAAATCTCACAAACCAGGCAAACCAGAGACTGTAGTGTGTGATGGTTAA 747 46.45 MQCGLSFIIMVFWVFGYGSLVWNPGFEFDEKIVGYIKDYKRVFDLACIDHRGTPENPARTLTLEQEEGAICWGAAFCVRGSPERERAAMEYLEQRECEYDQKTLVNFYKEVDSLEPALTGVIVFTSTPDKEVNKYYLGPAPLEDMARQIATASGPCGNNRDYIFMLEKALSRGGNGDRARERGEKGSRSPREWNLDGEQAARSSAPRSSTQPALTVLRTATTSRSHSHRFVIPKSHKPGKPETVVCDG 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10950028 10952719 + CmaCh01G015870.1 Cma01g01587 287280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01587 248 MobiDBLite consensus disorder prediction 173 192 - -
Cma01g01587 248 MobiDBLite consensus disorder prediction 201 228 - -
Cma01g01587 248 PANTHER CATION TRANSPORT PROTEIN CHAC-RELATED 10 172 IPR006840 GO:0003839|GO:0006751
Cma01g01587 248 PANTHER GAMMA-GLUTAMYLCYCLOTRANSFERASE 2-2 10 172 - -
Cma01g01587 248 Pfam ChaC-like protein 13 174 IPR006840 GO:0003839|GO:0006751
Cma01g01587 248 MobiDBLite consensus disorder prediction 173 248 - -
Cma01g01587 248 Gene3D - 11 182 - -
Cma01g01587 248 CDD GGCT_like 14 119 IPR013024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01587 K22596 GGCT; gamma-glutamylcyclotransferase, plant [EC:4.3.2.9] - csv:101209842 328.176
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01587 Cma09g00541 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01587 Cma-Chr1:10950028 Cma04g02355 Cma-Chr4:16340632 4.09E-60 dispersed
Cma01g01587 Cma-Chr1:10950028 Cma12g00273 Cma-Chr12:1417007 2.88E-88 wgd
Cma01g01587 Cma-Chr1:10950028 Cma05g00616 Cma-Chr5:3091084 5.63E-100 wgd
Cma01g01587 Cma-Chr1:10950028 Cma09g00541 Cma-Chr9:2421162 2.92E-117 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g241 . . . . . . . . . . Cma01g01587 . . Car12g00258 Sed03g1518 Cpe07g00236 . Bhi04g01114 Tan02g2598 . . . . Lcy13g1366 . . . . . . . . . . Cone20ag0622 . . . Cme03g01710 . . . . . . . . . Cmo01g01635 . Cma09g00541 . . . . Cpe02g00391 . . . . . . . Cla08g01252 . . . . . Cre08g1191 Lsi08g01114 Csa02g02305 . Cme04g00317
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002891 1 3 1 2 0 1 4 1 1 2 2 1 2 2 2 2 1 3 3 2 2 2 1 1 2 0 2 3 4 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01587 Cma_Chr01 FPKM 190.677795 195.875717 158.999908 164.857422 188.439789 189.344849 182.367996 46.305065 53.134747 44.998978