Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01588 ATGGATTCGGCATCTCTGGCTTCTCTCGCGCCTTCTCTCGCGCCTTCTCATACGCAGCAGAATCTTCACAGAGTCTTCGTCTACGGTAGTCTCTTGTCTGATGAAGTCGTTCATATCCTCTTGAAGCGCACTCCTCAGTCCTCTGCTGCCGTCCTCAATGACTTTCAAAGATTAACCATTAAAGGACGAGTTTATCCAGCGATCATACCTGTTGATGGCAAGAAAGTATCTGGCAAGGTTCTTTCAGGCATCACAGACACCGAATTGGATATTTTAGACGCATTTGAGGATGTTGAATACAAAAGGAGCACAGTTGAGGTCTCTTTAACGGCTTTAGATAACCTTTTGCTGGACAGTCTTGAGAAGTTATTAGTTTATGTCTATATTTGGAACAACGAAAGGGATCCAGACCTGTATGGAGATTGGGATTTTGAGGAGTGGAAGCGAGCTCATCTGGATGCTTACCTGGAGATGGTCAATGAGTTTATAGAAGAATTTGAGCATCATCCCCCACAAGAACAATGCGTGGCCGTTGATGAAGCAGGACAGCGATGCGAACAACCACTCCACTCTCCAGCACAAGAAGAAGAAGAACCTTCGAAACTAAACTGCGAGTAA 618 45.15 MDSASLASLAPSLAPSHTQQNLHRVFVYGSLLSDEVVHILLKRTPQSSAAVLNDFQRLTIKGRVYPAIIPVDGKKVSGKVLSGITDTELDILDAFEDVEYKRSTVEVSLTALDNLLLDSLEKLLVYVYIWNNERDPDLYGDWDFEEWKRAHLDAYLEMVNEFIEEFEHHPPQEQCVAVDEAGQRCEQPLHSPAQEEEEPSKLNCE 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10954404 10959800 + CmaCh01G015880.1 Cma01g01588 287281

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01588 205 MobiDBLite consensus disorder prediction 186 205 - -
Cma01g01588 205 SUPERFAMILY Gamma-glutamyl cyclotransferase-like 22 145 IPR036568 -
Cma01g01588 205 PANTHER AVRRPT2-INDUCED PROTEIN 2-LIKE 14 168 - -
Cma01g01588 205 CDD GGCT_like 25 130 IPR013024 -
Cma01g01588 205 MobiDBLite consensus disorder prediction 190 205 - -
Cma01g01588 205 Gene3D - 137 179 - -
Cma01g01588 205 PANTHER AIG2-LIKE PROTEIN D 14 168 IPR045038 -
Cma01g01588 205 Pfam Gamma-glutamyl cyclotransferase, AIG2-like 25 143 IPR009288 -
Cma01g01588 205 Gene3D - 11 136 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01588 - - - cpep:111788288 358.221
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01588 Cma09g00542 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01588 Cma-Chr1:10954404 Cma05g00615 Cma-Chr5:3083271 7.50E-55 wgd
Cma01g01588 Cma-Chr1:10954404 Cma09g00542 Cma-Chr9:2426196 2.53E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g239 . . . . . . . . . . Cma01g01588 . . . . . . Bhi04g01117 . . . Hepe10g0331 . Lcy13g1370 . . . . . . . . . . Cone20ag0620 . . . Cme03g01714 . . . . . . . Bma02g00085 . Cmo01g01636 . Cma09g00542 . . . . Cpe02g00390 . . . . . . . Cla08g01250 Cam08g1708 Cec08g1288 Cco08g1409 Clacu08g1405 . Cre08g1189 Lsi08g01113 Csa02g02303 . Cme04g00316
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000996 1 12 1 1 1 2 2 2 2 4 2 2 3 4 3 3 2 2 3 2 3 2 2 2 2 2 2 5 4 1 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01588 Cma_Chr01 FPKM 5.889791 8.063118 10.755433 10.620826 19.458286 20.386089 16.622442 20.62431 20.921825 24.567135