Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma01g01589 | ATGATGGGCAATGAGTGGCTTAATGGTTTTGGCCCTCTGGGCAACGAGAGTTTAGACTTTCTTCATATCAAATCAGAAACCAAAGTCGCCATGGATTCAAAAAAGTCCAACAAAATCAGAGACATCGTTAGGCTTCAACAGATCCTCAAGAAGTGGCGGAAGTTGGCGAACTCATCAAAGACGGCGAATAGATACTCCGGCACGGCGGTGGGATCTGGCGGAAAGAGCATGAAGTTTCTGAAGCGGACGCTCTCAGCCGGATGCGATGTCTCCGGAGCGTCCGTACCGAAAGGATCTTTGGCGGTGAGCGTCGGTGAGGAGCAAAAGCGCTTTGTGATTCCAACGCAGTACTTAGGGCATCCGGCGTTTGAGATTCTGTTAAGAGAGGCGGAGGAGGAGTTCGGATTTCAACAAACCGGAGTTCTGAGGCTTCCTTGCGAGGTAACGGTGTTTGAACATGTGGTGAGATTGGTGGAGAGGAAGAAGGGAGATTTGTTCGGCGGAGAGGAAGTTTTGAGTCTTTGTTCGTTGGAATCGCTGCTGCTTACGCCGTCGCACCGTCCGCAGAGTCCAATGTGCAGATAG | 585 | 50.94 | MMGNEWLNGFGPLGNESLDFLHIKSETKVAMDSKKSNKIRDIVRLQQILKKWRKLANSSKTANRYSGTAVGSGGKSMKFLKRTLSAGCDVSGASVPKGSLAVSVGEEQKRFVIPTQYLGHPAFEILLREAEEEFGFQQTGVLRLPCEVTVFEHVVRLVERKKGDLFGGEEVLSLCSLESLLLTPSHRPQSPMCR | 194 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 10971844 | 10976457 | - | CmaCh01G015890.1 | Cma01g01589 | 287282 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma01g01589 | 194 | Pfam | Auxin responsive protein | 51 | 157 | IPR003676 | GO:0009733 | |
| Cma01g01589 | 194 | PANTHER | SAUR FAMILY PROTEIN | 35 | 194 | - | - | |
| Cma01g01589 | 194 | PANTHER | AUXIN-INDUCED PROTEIN-LIKE-RELATED | 35 | 194 | IPR003676 | GO:0009733 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma01g01589 | Cma-Chr1:10971844 | Cma01g01962 | Cma-Chr1:12666544 | 3.46E-24 | dispersed | |
| Cma03g01149 | Cma-Chr3:7750338 | Cma01g01589 | Cma-Chr1:10971844 | 7.48E-20 | dispersed | |
| Cma07g00847 | Cma-Chr7:3951165 | Cma01g01589 | Cma-Chr1:10971844 | 8.24E-20 | dispersed | |
| Cma11g01353 | Cma-Chr11:8960084 | Cma01g01589 | Cma-Chr1:10971844 | 6.36E-06 | dispersed | |
| Cma19g00773 | Cma-Chr19:7588445 | Cma01g01589 | Cma-Chr1:10971844 | 2.38E-10 | dispersed | |
| Cma04g01883 | Cma-Chr4:9707022 | Cma01g01589 | Cma-Chr1:10971844 | 2.94E-25 | transposed | |
| Cma06g00005 | Cma-Chr6:17377 | Cma01g01589 | Cma-Chr1:10971844 | 1.48E-24 | transposed | |
| Cma17g00621 | Cma-Chr17:5294709 | Cma01g01589 | Cma-Chr1:10971844 | 2.94E-42 | transposed | |
| Cma01g01589 | Cma-Chr1:10971844 | Cma09g00543 | Cma-Chr9:2431918 | 3.90E-81 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma01g01589 | K14488 | - | csv:101216710 | 241.121 |