Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01590 ATGGTGGCGGAGTGGAGGAGCTGTTATTTGGATGTAATATTGGTTCCTTTGGGGTCATTGATAAGCTGTGGATATCATGCATGGCTTTGGCACCGAGTTCGGACTCAGCCTTTCACAACTCTCATTGGTATTAACACTAATGCTAGGCGTTTTTGGATCTCTACCATTTTACAGGATAATGAGAAGAAGAACATCCTAGCCGTCCAATCACTGAGGAACACGATAATGGGATGCACCCTAATGGCCACTACTTCCATTCTCCTCTGTACGGGCTTAGCGGCAGTTCTCAGCAGTACGTACAGCATAAAAAAGCCTTTAAACGACGCCGTTTACGGGGCCCACGGCGAATTCATGTTGGCCCTTAAATACGTGACTTTGCTCACACTATTCCTCTTCTCCTTCTTCTGCCATTCCCTCTCCATCAGATTCATAAACCAGGTTAATATTCTGATCAACATTCCCGCCGGCGCCACCGCCGTCACTCCCGATTACATCTCCGATATCCTCGACAAAGGCTTCCTTCTCAACACCGTCGGTAACCGCCTCTTCTACGGCGCCCTGCCGTTGCTTCTCTGGATTTTCGGCCCGGTTTTGGTCTTCGTTTGCTCTGTTTCCATGGTGCCTGTGCTTTACAATCTCGACATCGTTTGCTACGCCGCCGCCGGGAAACGGAATACGCTCGCAGCCGGTGAAGCTAACGGTGATCTGAATAATGTTTAG 720 49.31 MVAEWRSCYLDVILVPLGSLISCGYHAWLWHRVRTQPFTTLIGINTNARRFWISTILQDNEKKNILAVQSLRNTIMGCTLMATTSILLCTGLAAVLSSTYSIKKPLNDAVYGAHGEFMLALKYVTLLTLFLFSFFCHSLSIRFINQVNILINIPAGATAVTPDYISDILDKGFLLNTVGNRLFYGALPLLLWIFGPVLVFVCSVSMVPVLYNLDIVCYAAAGKRNTLAAGEANGDLNNV 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10983078 10984711 + CmaCh01G015900.1 Cma01g01590 287283

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01590 239 PANTHER PLANT/F12B17-70 PROTEIN 4 225 - -
Cma01g01590 239 Pfam Protein of unknown function, DUF599 13 216 IPR006747 -
Cma01g01590 239 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Cma01g01590 239 PANTHER - 4 225 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01590 - - - csv:101209101 421.009
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01590 Cma09g00544 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01590 Cma-Chr1:10983078 Cma18g00119 Cma-Chr18:586109 5.07E-64 dispersed
Cma01g01590 Cma-Chr1:10983078 Cma12g00272 Cma-Chr12:1403964 5.93E-119 wgd
Cma01g01590 Cma-Chr1:10983078 Cma09g00544 Cma-Chr9:2452419 2.04E-146 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g232 . . . . Bpe02g01203 . Bma04g00356 . . . Cma01g01590 . . . . . . Bhi04g01128 . . . Hepe10g0333 . Lcy13g1373 . . . . . . . . . Cone17ag1097 . . . . Cme03g01716 Blo17g00052 . . Bda13g01309 . . . . . Cmo01g01638 . Cma09g00544 . . . . Cpe02g00388 . . . . . . . Cla08g01247 Cam08g1705 Cec08g1285 Cco08g1406 Clacu08g1402 . Cre08g1187 Lsi08g01110 Csa02g02300 . Cme04g00311
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000958 3 4 2 3 3 2 4 2 2 2 2 2 5 2 3 4 2 4 6 2 3 2 3 3 2 2 2 5 3 1 85
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01590 Cma_Chr01 FPKM 12.445575 13.699191 23.497004 25.895092 1.20001 1.110687 0.88354 0.359837 0.426646 0.194585