Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01591 ATGTTGCCGAGTCGTGTTTCGGGATTTTCAGCTTTCCCGTTTGTTTATCGGATTAATTTCATCCTCGGAAGGTCCGAATCATTTCATTTCTCAGCTTATTTTTCTCAGATGGCATGGGGCAACATATACAGAAGAAGAATGAGAGTGTTCACCCTGGCTTTAGTGATATACCTGGATTATAAGGCATTAGAACAAAGAGAGAAGTGGATTAGCAAGTCTAAAAGATCAGCCTTATGGGAAAAGGCACATGAACGTAATGCAAAGCGCTCGTTGAGTTTGATTATAGAGTTGGAAGGTTTGTGGGTGAAATTTGGACAGTATTTATCTACTCGAGCAGATGTTATCCCTGATGCCTACATACGCCTCCTCAAACAGTTACAGGACTCTCTTCCTCCTCGTCCTTTACAAGAGGTTCGTCAGACCATACAGAAAGAGTTGGGGAAACCAATCAGTGATTTGTTTACAAACTTTGTGGAAGCGCCCTTAGCAACTGCATCTATAGCCCAAGTGCACCGAGCAACGTTGCTTGATGGAAGGGAGGTGGTTATCAAAGTGCAACACGAGGGCGTAAAGGCAGTTATATTAGAGGACCTGAAGAATGCAAAGGCGGTTGTTGATTGGATAGGCTGGGCAGAGCCGCAGTATGACTTTAATCCCATAATAGATGAATGGTGCCGAGAAGCTCCCAAAGAACTTGATTTCAATCTTGAAGCTGAGAACACCAGGACAGTATCTAGAAATCTTGGCTGCACAAACGAATCGGATGGCAATGAAGTCCTTGGGACTGTGAATGTTTCGATACCGGAAGTTATTCAGTCAACAGAGAAAGTTCTAATTTTAGAGTATATGGACGGTATACGCTTAAATGACGCTGCCGACCTGGAAGCTTATGGTATTGACAAAAACAAAATTGTTGAAGAAATCACACGAGCTTATGCACACCAAATTTATGTTGATGGATTTTTCAATGGAGACCCTCATCCTGGGAATTTTCTCATCAGCAAGGAGCCTCCTCATCGTCCAATTTTGCTCGACTTTGGGCTGACAAAGAAATTACCTTGCACCATGAAACTAGCTCTGGCAAAGATGTTTTTAGCAGCTGCAGAGGGTGACCACGTTGCTCTTCTATCTTCCTTCACTGAAATGGGACTTAAGTTGCATCTTGATGTGCCAGAGCAAGCAATGGCGGTGACGAATGTATTCTTTCGAGCAGCAACTGCTGCAAAAGAATCACATGAAACCTTCAAAGCTGCGGCAGAGCAAAGATCGAAGAATCTGAAGGAAATACAAGAAAAAATGAAATTAAATCATAAGGAGGCTAAACGTTTTAATCCTGTTGATGCATTTCCTAGTGATATTATAATATTTGCACGGGTCCTTAATCTTCTAAGAGGTCTTTCCTCCTTGATGGATGTTCGCACAGTATATCTAGATATCATGAGACCGTTTGCTGAATATGTTTTACAAGCAAGCATTAGCAAGGAGCCAAATGTAAATGATCAATGGATCTGGAGAACACCTATTCATTCTGATGTGGAAGATAAGCTGAGACAGCTCTTAATCAAGCTGGGGAATGAGAATAAAATACTTGGAATCCAGGTGTGTGCCTACAAAGATGGAGAGGTCATTATTGATACTGCTGCTGGAGTTATGGGTAAATATGATCCTCGTCCAGTTCAACCTGATACTCTTTTTCCAGTGTTCTCTGTGACAAAGGGCATCACAGCTGGAATGTTGCATTGGCTAGTTGATAATGGGAAACTGAAGTTTGAGGAAAATATTGCTAATATTTGGCCGGAATTTGGATCAAATGGTAAAGATATAATAAAGGTCTATCAAGTGCTTAACCACACTTCAGGTCTGCATAATGCCACGGTCAATGTTAGGGAAAATCCTTCGCTAATTTGTGACTGGGACGAATGTTTGAATTGCATGGCTAAATCAGTGCCAGAGACTGAACCTGGCCAGGAGCAGGTGTATCACTATCTATCCTATGGGTGGCTATGTGGTGGAATCATTGAGCACGCAACGGGGAAGAAATTCCAAGAGATTCTTGAAGAAGCATTAGTTAACCCACTCCATATACAAGGCGAGCTATACATCGGAATCCCTCCCGGAGTTGAATCTCGTCTTGCAACACTAACACCAGATCTTAATGATCTACAAAATATCTCTGGGATCGATCCTTCTGAATTGCCCTCCACCTTCCAGCCAACCATGATTGCGCAGCTTGCCAGTACTCTCGCACCTCTATTTAATATGCTCAATACTCGCCGTGCCGTTATACCTGCTGCCAATGGACATTGCTCGGCCCGCGCACTGGCACGTTATTATGCAGCATTGGCTGATGGCGGTGTGATACCACCACCCCATTCCTCAGCCTCCCAACCAGCTCTTGGAAGCCACCTTCACATCCCTAAATTTCCCTCGGAGAATTCAAAGAAGCAAAAAGCTTCCAGAACTAAGGACATTCATGCCAACTTAAATAATGACCATCAAAAGAACTTGAATTCTACTGAAACGGACGCCAATGGTGGTCTCTTCAGGAATACAAGCAATACTGGTTATACTAGGCTCCTTGATAACAGCAGCAGTAGCAATGCCAATGATCCCAGCACAAGAGCCGACTCGAGGCATGGAAACACTGCAAAAAAGTTCGTAGGAAACATGTTCAAAGACCCTGGAATTCATGATGCCTTTTTGGGTATAGGCAAATATGAGAATTTCGCCATTCCAAATGGGAAGTTTGGATTAGGATTCTCAAGGTTGAGATCAGATCAAGGTTCTTTTATTGGTTTTGGCCATTCAGGAATGGGCGGATCCACAGGTTTTTGTAATATTGATCACAATTTTGCCATCTCAGTGAACCTCAACAAAATGTCTCTGGGGGGTGTTACTGCCAGCATAGTTCAGTTCGTTTGTTCCGAGCTGAATATCCCGTTACCAGCCGAATTTTCCCCGCTCGTGGTGGCCACTCCTTTGATTAACTGA 2991 43.23 MLPSRVSGFSAFPFVYRINFILGRSESFHFSAYFSQMAWGNIYRRRMRVFTLALVIYLDYKALEQREKWISKSKRSALWEKAHERNAKRSLSLIIELEGLWVKFGQYLSTRADVIPDAYIRLLKQLQDSLPPRPLQEVRQTIQKELGKPISDLFTNFVEAPLATASIAQVHRATLLDGREVVIKVQHEGVKAVILEDLKNAKAVVDWIGWAEPQYDFNPIIDEWCREAPKELDFNLEAENTRTVSRNLGCTNESDGNEVLGTVNVSIPEVIQSTEKVLILEYMDGIRLNDAADLEAYGIDKNKIVEEITRAYAHQIYVDGFFNGDPHPGNFLISKEPPHRPILLDFGLTKKLPCTMKLALAKMFLAAAEGDHVALLSSFTEMGLKLHLDVPEQAMAVTNVFFRAATAAKESHETFKAAAEQRSKNLKEIQEKMKLNHKEAKRFNPVDAFPSDIIIFARVLNLLRGLSSLMDVRTVYLDIMRPFAEYVLQASISKEPNVNDQWIWRTPIHSDVEDKLRQLLIKLGNENKILGIQVCAYKDGEVIIDTAAGVMGKYDPRPVQPDTLFPVFSVTKGITAGMLHWLVDNGKLKFEENIANIWPEFGSNGKDIIKVYQVLNHTSGLHNATVNVRENPSLICDWDECLNCMAKSVPETEPGQEQVYHYLSYGWLCGGIIEHATGKKFQEILEEALVNPLHIQGELYIGIPPGVESRLATLTPDLNDLQNISGIDPSELPSTFQPTMIAQLASTLAPLFNMLNTRRAVIPAANGHCSARALARYYAALADGGVIPPPHSSASQPALGSHLHIPKFPSENSKKQKASRTKDIHANLNNDHQKNLNSTETDANGGLFRNTSNTGYTRLLDNSSSSNANDPSTRADSRHGNTAKKFVGNMFKDPGIHDAFLGIGKYENFAIPNGKFGLGFSRLRSDQGSFIGFGHSGMGGSTGFCNIDHNFAISVNLNKMSLGGVTASIVQFVCSELNIPLPAEFSPLVVATPLIN 996
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10986688 10995203 - CmaCh01G015910.1 Cma01g01591 287284

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01591 996 MobiDBLite consensus disorder prediction 808 829 - -
Cma01g01591 996 SUPERFAMILY beta-lactamase/transpeptidase-like 510 789 IPR012338 -
Cma01g01591 996 PANTHER ABC1 FAMILY PROTEIN 37 986 - -
Cma01g01591 996 Pfam ABC1 atypical kinase-like domain 125 376 IPR004147 -
Cma01g01591 996 Pfam Beta-lactamase 517 795 IPR001466 -
Cma01g01591 996 MobiDBLite consensus disorder prediction 830 876 - -
Cma01g01591 996 Gene3D - 511 814 IPR012338 -
Cma01g01591 996 Coils Coil 416 436 - -
Cma01g01591 996 CDD ABC1_ADCK3-like 125 379 - -
Cma01g01591 996 PANTHER ABC1 FAMILY PROTEIN 37 986 - -
Cma01g01591 996 MobiDBLite consensus disorder prediction 789 881 - -
Cma01g01591 996 SUPERFAMILY Protein kinase-like (PK-like) 127 360 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01591 K08869 ADCK, ABC1; aarF domain-containing kinase - csv:101216220 1629.77
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01591 Cma09g00545 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01591 Cma-Chr1:10986688 Cma13g00782 Cma-Chr13:6722564 9.28E-54 dispersed
Cma01g01591 Cma-Chr1:10986688 Cma09g00545 Cma-Chr9:2456786 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g230 . . . . . Bpe02g00276 . . . . Cma01g01591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00003 . . . . . . . Cmo01g01639 . Cma09g00545 . . . . Cpe02g00386 . . . . . . . . . . . . . . . Csa02g02327 . Cme04g00310
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008509 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01591 Cma_Chr01 FPKM 2.883581 2.882786 5.812396 6.380167 0.896224 0.816473 1.188599 2.370415 2.26865 1.964982