Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01607 ATGGCGAAAGAGAGAGAACTACTCGTTTACTATGCTAGATTGGCAGAGCAGGCCGAGAGATATGAAGAGATGGTTGAGGAAATGAAGAAGGTTGTGAAGTTAAACGTGGAATTGACAGTGGAAGAGAGAAATCTGCTTTCTGTTGGCTATAGGAATGTAATGGGAGCTAGACGAGCTTCATGGCGCATTTTGTCTTCAATTGAACAGAAGGAGATAACCAAACATAATGAGAAGAATGTGGAACGGATAATTGAGTATAGGCATCGGGTAGAAGATGAGCTCTCTAAAATATGCAGTGACACATTGTCAAATATTGACCAGCATCTCCTTCCAAGTTCATCAGCTGGAGAATCTACTGTATTCTACCATAAGATGAAAGGAGATTATTGTCGGTATTTGGCAGAGTTTAAATCTGGTGATGAGCGTAAACAAGTTGCAGAACAGTCATTAAAGGCTTATGAGGCTGCTTCGACTATTGCTAACTCTGATTTGCCTCCAACTCATCCTATAAGACTTGGCCTGGCTCTCAACTTCTCTGTTTTCTACTATGAGATTTTGAATTCCCCTGAAAGGGCTTGCCACCTTGCCCAGATCGCCTTTGATGAGGCAATTGCAGAACTTGGCAGTCTCAATGAAGATTCCTACAAGGACAGTTCCCTCATTTTGCAGCTTCTCAGGGACAATCTAACCCTGTGGACTTCCAATTTGCCAGACGAAGGAAAGCAATCCAGTACCGATGAACTCTAG 747 42.7 MAKERELLVYYARLAEQAERYEEMVEEMKKVVKLNVELTVEERNLLSVGYRNVMGARRASWRILSSIEQKEITKHNEKNVERIIEYRHRVEDELSKICSDTLSNIDQHLLPSSSAGESTVFYHKMKGDYCRYLAEFKSGDERKQVAEQSLKAYEAASTIANSDLPPTHPIRLGLALNFSVFYYEILNSPERACHLAQIAFDEAIAELGSLNEDSYKDSSLILQLLRDNLTLWTSNLPDEGKQSSTDEL 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11072379 11075531 - CmaCh01G016070.1 Cma01g01607 287300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01607 248 PRINTS 14-3-3 protein zeta signature 37 66 IPR000308 -
Cma01g01607 248 PRINTS 14-3-3 protein zeta signature 86 110 IPR000308 -
Cma01g01607 248 PRINTS 14-3-3 protein zeta signature 117 139 IPR000308 -
Cma01g01607 248 PRINTS 14-3-3 protein zeta signature 152 178 IPR000308 -
Cma01g01607 248 PRINTS 14-3-3 protein zeta signature 179 205 IPR000308 -
Cma01g01607 248 PRINTS 14-3-3 protein zeta signature 206 235 IPR000308 -
Cma01g01607 248 PANTHER 14-3-3-LIKE PROTEIN GF14 OMICRON 3 243 - -
Cma01g01607 248 Pfam 14-3-3 protein 12 233 IPR023410 -
Cma01g01607 248 SUPERFAMILY 14-3-3 protein 4 234 IPR036815 -
Cma01g01607 248 PANTHER 14-3-3 PROTEIN 3 243 IPR000308 -
Cma01g01607 248 Gene3D - 1 246 IPR036815 -
Cma01g01607 248 SMART 1433_4 5 246 IPR023410 -
Cma01g01607 248 Coils Coil 11 34 - -
Cma01g01607 248 PIRSF 14-3-3 1 246 IPR000308 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01607 Cma12g00101 CCT
Cma01g01607 Cma05g00501 CCT
Cma01g01607 Cma12g00101 ECH
Cma01g01607 Cma05g00501 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01607 Cma-Chr1:11072379 Cma11g01888 Cma-Chr11:12509581 7.40E-136 dispersed
Cma01g01607 Cma-Chr1:11072379 Cma01g01616 Cma-Chr1:11112714 8.58E-115 proximal
Cma01g01607 Cma-Chr1:11072379 Cma05g00501 Cma-Chr5:2374954 8.02E-123 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01607 K06630 - csv:101213169 402.519