Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01609 ATGGCAAAATTCAATTGCTTCTCCGTTCGATCAGGGAAGAAGAAGAAAACCAAGGATGGTTTAGAATCGCAAATGCCTGCTGAATTGAATAGTTTGACGAAGACCTTGCAAGTCAGTATCCATCACACTGAGGAATCTTTTCAAGATGGAGAAGCGAAGTCATCGACCATGGACGTTGCAATTCTGTACCCATCTGAGAATAATTCTAAGCTGGATGTTAAGGTAACGAACAATGAGAATCCTGTAGGAGGAGGAGGAGGAGCAGTAGAAGCTGCATATGAAGGGGAAGATGAGCGTGACGACAACTCCATCAAGAGGAACCTTTCTGACTTTGATCTCGCTGCTCAAGACACCAGTGGAGAAGAATTCGAGTTTCGATTTTCTACTTCGTTGGAAAAACAATTTGATAATACCGTCGTTGAAGGTGGAGAAGGGGCTGATGCGATCCAAACTGGACATGTTAGTGATCCTGGAATTGGTAAGGCAGTATGTTGGGCATCGCCTAAACTTAAACGCTCCTGCTCTAATCTGGAAACCAGGGATGTGCTTAGAGATCTATCTCATCAGATGCCCCCTTCAAAGTCTCAGTCTTTTGAGAAACTGCAAGAATTGGCTGACAAAATGTGGAACTATGTCGAGCCGGGCAGTCCGGAATCTATTATGACCCATCGCAGTGCTGATAAAGTGATGTTGAAGAAGCGTTCTTCAAGCCAGATTCTGCCTTCCAGAAGTCGAAGGTTGTGGTGGAAGTTGTTCCTGTGGAGCCATAGAAACCTGCAAAAGCCGTGGACTGCCAAGGCTGCTGCTCCTACTAGCTCTGCTTTCAACCAGCAAGGCGGGTATTGTTCGGATAATCTTGAGCCGAACAGAGCTGTGGGGAAAAGTATGATGGAATCGCCAGGATCATATGCAGAGGAAACCTGGACCAATGACCCGAATAACAGTAAAGTTGAGGATCAGAATCAGGAGAGCTTGTGTAATGGAGTCTCTGGTTTGTGGCCACAAAACCAGTGGGTTGCATTTTCAGCAGAATCATCTTCCCTAAGAAGAGTGGATGAGTGGGTGAAGGATCTTCAAATTGAGCCATGTCTTTCGATCGACAACATTAGAGATGACAACGATGAAGATACTTTCTCTCTGCCATATCCCGAGAGAACTGCAAGTCACACAGCTCGACGTGGAGAACTCAATCTTACAGAAGAGATTTTGCACGCTAATAGCGTCATCCAATCTCTGAATTCTTCCTCGACCGTGGCTCACATCTCTGGTATTGGCTTAAAAGCCATACCCACAATCTCACACCTATCCGGTCTTAGATCCGTCAATTTGTCCGGCAACCTCATAGTTCACATCAACTCTGGATCACTGCCCAAGGGACTGCACACTCTTAACTTGTCCAGGAACAAGATCAGCGCCATTGAAGGACTCAAAGAATTAACACGTCTTCGAATCCTCGACCTGAGTTACAATCGCATTTCTCGCATAGGACATGGGCTGTCAAATTGTGCGATTATCAAGGAACTTCATCTCGCTGGCAACAAGATTAGTGATGTCGAGGGACTACATCGACTCTTGAAGCTCACTGTACTCGACCTGAGCTTCAACAAGATTTCAACAACCAAAGCTCTGGGCCAACTTGTAGCCAACTATAACTCTCTTCAAGCTCTTAATCTGTTGGGAAATCCAATTCAAAGCAACGTGAGTGATGAGCAGCTTCGCAAGGCTGTTATTGGCCTTCTTCCAAACCTTGTTTATCTAAACAAGCAGGCCATCAAAGCACAGAGAGCTCGAGAAGCAGTGACCGATAGCATTGCTAAAGCAGCACTAGGAGGGAACAGTAGTTGGAATTCTCGCAGAAGATCATCAAGGAAAACAAGCCAGATGATTGCATCGTCTTCCATTAGTGGGCGGAGGAGCAGCACTGCAAGTGTTGCTGCTGCACACAAAGGCAGGCACAGATCAAAAGCGCCAACCCCACGCCCTTCTTCTCTGGGGTTGGCTTCATCTCGTTAA 2013 46.2 MAKFNCFSVRSGKKKKTKDGLESQMPAELNSLTKTLQVSIHHTEESFQDGEAKSSTMDVAILYPSENNSKLDVKVTNNENPVGGGGGAVEAAYEGEDERDDNSIKRNLSDFDLAAQDTSGEEFEFRFSTSLEKQFDNTVVEGGEGADAIQTGHVSDPGIGKAVCWASPKLKRSCSNLETRDVLRDLSHQMPPSKSQSFEKLQELADKMWNYVEPGSPESIMTHRSADKVMLKKRSSSQILPSRSRRLWWKLFLWSHRNLQKPWTAKAAAPTSSAFNQQGGYCSDNLEPNRAVGKSMMESPGSYAEETWTNDPNNSKVEDQNQESLCNGVSGLWPQNQWVAFSAESSSLRRVDEWVKDLQIEPCLSIDNIRDDNDEDTFSLPYPERTASHTARRGELNLTEEILHANSVIQSLNSSSTVAHISGIGLKAIPTISHLSGLRSVNLSGNLIVHINSGSLPKGLHTLNLSRNKISAIEGLKELTRLRILDLSYNRISRIGHGLSNCAIIKELHLAGNKISDVEGLHRLLKLTVLDLSFNKISTTKALGQLVANYNSLQALNLLGNPIQSNVSDEQLRKAVIGLLPNLVYLNKQAIKAQRAREAVTDSIAKAALGGNSSWNSRRRSSRKTSQMIASSSISGRRSSTASVAAAHKGRHRSKAPTPRPSSLGLASSR 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11079981 11082804 + CmaCh01G016090.1 Cma01g01609 287302

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01609 670 SMART LRR_typ_2 524 546 IPR003591 -
Cma01g01609 670 SMART LRR_typ_2 435 458 IPR003591 -
Cma01g01609 670 SMART LRR_typ_2 479 502 IPR003591 -
Cma01g01609 670 MobiDBLite consensus disorder prediction 611 642 - -
Cma01g01609 670 SUPERFAMILY Outer arm dynein light chain 1 426 593 - -
Cma01g01609 670 MobiDBLite consensus disorder prediction 296 319 - -
Cma01g01609 670 Pfam Leucine-rich repeat 439 544 - -
Cma01g01609 670 Gene3D Ribonuclease Inhibitor 384 499 IPR032675 -
Cma01g01609 670 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 3 656 - -
Cma01g01609 670 ProSiteProfiles Leucine-rich repeat profile. 481 503 IPR001611 GO:0005515
Cma01g01609 670 ProSiteProfiles Leucine-rich repeat profile. 526 547 IPR001611 GO:0005515
Cma01g01609 670 MobiDBLite consensus disorder prediction 611 670 - -
Cma01g01609 670 Gene3D Ribonuclease Inhibitor 500 597 IPR032675 -
Cma01g01609 670 MobiDBLite consensus disorder prediction 302 319 - -
Cma01g01609 670 ProSiteProfiles Leucine-rich repeat profile. 504 525 IPR001611 GO:0005515
Cma01g01609 670 SMART LRR_sd22_2 524 545 - -
Cma01g01609 670 SMART LRR_sd22_2 457 478 - -
Cma01g01609 670 SMART LRR_sd22_2 502 523 - -
Cma01g01609 670 SMART LRR_sd22_2 479 501 - -
Cma01g01609 670 ProSiteProfiles Leucine-rich repeat profile. 459 480 IPR001611 GO:0005515
Cma01g01609 670 PANTHER NISCHARIN RELATED 3 656 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01609 - - - csv:101212929 1043.11
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01609 Cma09g00558 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01609 Cma-Chr1:11079981 Cma13g00353 Cma-Chr13:4065179 7.64E-07 dispersed
Cma19g00950 Cma-Chr19:8429001 Cma01g01609 Cma-Chr1:11079981 9.49E-75 transposed
Cma01g01609 Cma-Chr1:11079981 Cma09g00558 Cma-Chr9:2537917 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g415 . . . Bda03g00490 Bpe02g00110 Bpe04g00445 . . . . Cma01g01609 Cma09g00558 Car01g01227 . . Cpe06g00424 . . . . . . . . . . . . . . . Cone4ag1333 Cone7ag1596 Cone17ag1215 Cone20ag0510 Lsi04g02236 Csa03g04447 Chy04g00253 . . . Bda11g00767 . . . . . Sed05g1600 Cmo01g01655 Cmo09g00548 . . . Car09g00489 . Cpe02g00371 Bhi09g02438 Tan01g3790 Cmetu12g0935 . Hepe01g2129 Mch11g0667 . Cla11g01383 Cam11g1441 Cec11g1467 Cco11g1463 Clacu11g1598 Cmu11g1417 Cre11g1837 . . . Cme04g00283
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008863 1 1 0 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01609 Cma_Chr01 FPKM 42.399609 46.12196 34.541004 32.500942 16.867208 16.662783 16.783783 65.977615 66.558304 65.120682