Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01610 ATGTCCAGGCCTTTACATCGAGGTGCGTCCGGTGTTAAGGTACATGGTCATGGCGATGATAAATGGGATTCCCAAATGAAAGATAAAACTGAAAGGGAAGAGATGGAGAAGAGAGTTTCTTTAGATCATGGAGGAACTCTGGCTTCCAGGCTTCCCATTCGTGTACTTTTTCCAGACAATTCCCCATCCAAATATGGAGGCCCTGAGAATGACTTTGCTTCTGATTCTTTGAACGCACGAAGTCGACAGCAATTTATAATGCTAATGTTGAAATTAAGTTTAGTGGTGATTATAATTCTGGCCCTTACTGGTTCCTTTTGGTGGACACTTTCCATTTCGAGTTCATCCCAAGTTCAAATATTCCATGGTTATCGACGACTCCAAGAGCAGCTCGTTTCAGACCTTTGGGATATAGGCGAGATTTCCCTTGGTGCTTCGAGGTTGAAAGAGATCGAATTCTGTTCTCCAGAACTGGAGAATCATGTTCCTTGCTTCAATTCGAGCGATATTCAAGATGGTGCCTGTGATCGACATTGTGAGCCTAGCTCGTGGGAGAATTGTTTGGTCCAACCTCCCTTGAATTACAAGATTCCTCTTAGATGGCCGACCGGAAGGGATGTTATCTGGGTAACAAATGTGAAAATTACAGCACAGGAGGTGCTTTCCTCTGGAAGCCTATCCAAAAGAATGATGATGCTTGAAGAAGAACAAATATCCTTTCGTTCTGCCTCTCCAATGTTCGATGGTGTCGAAGATTACTCTCACCAAATTGCAGAAATGATTGGGCTGAGAAATGAATCTAATTTCAGAGAAGTTGGGGTAAGAACCATTCTGGATATAGGGTGTGGTTATGGGAGCTTTGGAGCACATCTTTTCTCCAAACATCTCATAACCATGTGCATAGCAAATTATGAGGCTTCAGGCAGTCAGGTTCAACTAACTCTTGAACGGGGTCTTCCTGCAATGCTTGGTTCGTTTACTTCGAAACAGTTGCCATATCCATCTCTGTCCTATGATATGGTTCATTGTGCACGATGTGATGTTGACTGGGATAGTAAAGATGGCAAATACTTGATTGAGGTTGATAGAGTTTTGAAGCCAGGGGGGTATTTTGTCTGGACATCGCAGATTACAGATACTCAGACTTTTCGTCACAAAAAAGAGAATCAGAAAAGGTGGAATTTCATTCAGGATTTTGTAGGATATCTGTGCTGGAAGATGTTGCCTCAACAAGATGAAACTGTTGTCTGGAAGAAAACTAGTAAAAGTAATTGTTATAGCTCACGGAAGCCAGATTCGTCTCCTCCAATATGTGGTAAAGGTCATGATATCGAATCTCCATATTACCGGCCACTCCAAGCCTGCATCGGTGGAAGAAAAAGTCGTCGTTGGGTTCCTATTAATGAACGAAGAACTTGGCCATCGAGGGCTATCTTAAACAAGAGTGAATTGGCTGTACATGGATTGGGTTTGGATGATTTCACAGAGGATGGTATAAGCTGGAAAATGGCAGTGAAGAACTACTGGTCTCTTTTGTCGCCACTAATCTTCTCGGATCATCCAAAACGACCCGGTGATGAGGATCCTTTACCCCCATACAACATGCTCCGCAACGTGCTAGACATGAACGCTCATTTTGGAGGCTTCAATTCTGCATTATTGGAAGCTGGAAAGTCTGTATGGGTCATGAACGTGGTGCCAACAGATGGTCCTAACCATCTTCCCTTGATAATGGATAGAGGCTTCGTTGGGGTATTGCACGATTGGTGCGAGGCCTTTCCAACGTATCCTAGATCATATGATTTGGTGCATGCAGCAGGACTTCTGTCCCTTGAAGTAACTAAGAAGCCAAGGTGCTCGATGCTCGATTTATTCAGCGAGATTGATCGGTTACTTCGTCCAGAGGGTTGGGTGATAATCCGTGACATGGCCACACTTATCGAATCGGCTCGAACTATAACTACACAGCTTAAGTGGGACGCACGAGTTATAAAAATCGAAGACAATAACGACGAGAGAGTCTTGATCTGCCAAAAACCATTCTTGAAGAGACAAGCAATCTGA 2064 43.6 MSRPLHRGASGVKVHGHGDDKWDSQMKDKTEREEMEKRVSLDHGGTLASRLPIRVLFPDNSPSKYGGPENDFASDSLNARSRQQFIMLMLKLSLVVIIILALTGSFWWTLSISSSSQVQIFHGYRRLQEQLVSDLWDIGEISLGASRLKEIEFCSPELENHVPCFNSSDIQDGACDRHCEPSSWENCLVQPPLNYKIPLRWPTGRDVIWVTNVKITAQEVLSSGSLSKRMMMLEEEQISFRSASPMFDGVEDYSHQIAEMIGLRNESNFREVGVRTILDIGCGYGSFGAHLFSKHLITMCIANYEASGSQVQLTLERGLPAMLGSFTSKQLPYPSLSYDMVHCARCDVDWDSKDGKYLIEVDRVLKPGGYFVWTSQITDTQTFRHKKENQKRWNFIQDFVGYLCWKMLPQQDETVVWKKTSKSNCYSSRKPDSSPPICGKGHDIESPYYRPLQACIGGRKSRRWVPINERRTWPSRAILNKSELAVHGLGLDDFTEDGISWKMAVKNYWSLLSPLIFSDHPKRPGDEDPLPPYNMLRNVLDMNAHFGGFNSALLEAGKSVWVMNVVPTDGPNHLPLIMDRGFVGVLHDWCEAFPTYPRSYDLVHAAGLLSLEVTKKPRCSMLDLFSEIDRLLRPEGWVIIRDMATLIESARTITTQLKWDARVIKIEDNNDERVLICQKPFLKRQAI 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11083181 11088017 - CmaCh01G016100.1 Cma01g01610 287303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01610 687 MobiDBLite consensus disorder prediction 12 43 - -
Cma01g01610 687 CDD AdoMet_MTases 276 372 - -
Cma01g01610 687 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 174 679 IPR004159 GO:0008168
Cma01g01610 687 PANTHER PECTIN METHYLTRANSFERASE QUA2-RELATED 39 684 - -
Cma01g01610 687 MobiDBLite consensus disorder prediction 1 43 - -
Cma01g01610 687 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 187 385 IPR029063 -
Cma01g01610 687 Gene3D Vaccinia Virus protein VP39 246 415 IPR029063 -
Cma01g01610 687 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 39 684 IPR004159 GO:0008168
Cma01g01610 687 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 502 644 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01610 K23870 QUA2, TSD2; putative pectin methyltransferase [EC:2.1.1.-] - csv:101212448 1259.2
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01610 Cma09g00561 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01610 Cma-Chr1:11083181 Cma04g01696 Cma-Chr4:8524929 0 dispersed
Cma01g01610 Cma-Chr1:11083181 Cma12g00161 Cma-Chr12:718348 8.31E-07 wgd
Cma01g01610 Cma-Chr1:11083181 Cma05g00503 Cma-Chr5:2388186 0 wgd
Cma01g01610 Cma-Chr1:11083181 Cma09g00561 Cma-Chr9:2542882 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g417 . Blo12g00708 Bda01g00888 Bda03g00489 Bpe02g00111 Bpe04g00443 . Bma01g02610 Cmo05g00528 . Cma01g01610 Cma09g00561 Car01g01228 . . Cpe06g00427 . . . . . . . . . . . . . . . Cone4ag1332 Cone7ag1597 Cone17ag1213 Cone20ag0512 Lsi04g02238 Csa03g04449 Chy04g00251 . Blo17g00117 Blo18g00131 Bda11g00768 Bda13g01399 Bpe02g01124 Bpe14g00456 Bma01g01401 Bma02g00139 Sed14g0863 Cmo01g01656 Cmo09g00551 . . Car05g00451 Car09g00492 Cpe11g00441 Cpe02g00370 Bhi09g02441 Tan01g3792 Cmetu02g0320 . Hepe01g2131 . . Cla11g01386 Cam11g1443 Cec11g1469 Cco11g1465 Clacu11g1600 Cmu11g1419 Cre11g1839 Lsi08g00889 . . Cme04g00281
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002427 4 2 2 4 4 0 3 1 1 1 1 1 3 1 1 3 1 4 3 1 1 2 2 2 1 1 2 4 2 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01610 Cma_Chr01 FPKM 12.500757 15.368347 45.225025 44.776367 16.333471 14.760534 17.798555 21.257406 21.772449 22.967556