Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01614 ATGAACTGTGTAATTGACTTTTCATGTCTTATCTTTTCAAGCAGACTAGAGATGACAGAGGGAAGCGATTTCAGGCACTGGGATGAGCTAATACCGGACGCTCTGGGGCTAATTTTCAGTAAACTCCCACTACAAGAGATACTTACCGTTATCCCCAGAGTCTGCAAATCATGGGCTAAAGCAGTGCTTGGACCTTACTGCTGGCAAGAGATTGACATTGAAGAATGGAGTAGCCGATGCCAGCCGGACAATGTCGATCGAATGCTTCAAATGCTTGTCAATCGAAGTGGCGGTTCGCTTCGCAAGCTCTGCGTTACTGGCCTCCATAACAGCAACATTTTCTCCTTCATCGCTGATCATGCTGGCTCTCTCCAGACATTGCGGCTGCCAAGGAGCAATATAAGCGATGCTCTAGTAGAACAGATTGCTGGAAGGCTTTCTGCAGTTACTTTTTTTGATCTAAGCTATTGTGATAAAATCAGTGCTAGGAGTTTAGAGTCTATAGGAAAGAATTGCAAAGCTTTGGTTGGAATCTGTCGAAACTTGCACCCGCTGCATACAGCAGGTATGCCGTTGCTGGACGATGAAGCGTACGCCATTGCAGCCACAATGCCAAAACTGGAGCACCTTGAAATGGCCTATCACCCTCTTAGCACTAAAAGCGTGATGACGATACTGTCGAGCTGCCCCAATCTCGAATTCCTCGATTTGAGAGGCTGTTGGGATGTAAGGCTGGAAGACAAGTTTGTGGCTGAGAAGTTCCCAAAACTAAGAGTGTTGGGGCCTCTGGTTAGAGACTACTACGAGCGAAACGAATGGGATGAATGCTCAGACTACTCATACATCTCCGACGACTTGGCTTGGGACTTCTCTGCAGATTACTTTGACGACGATGCCGAGAGTTACGACGATCCATGGGACGACGAAGACAGGCTAGAAGGACTCGAGTTGAGATTCTATGAAGGAATAGATGAAGTTGGTGGAGGCTTTGGTTGGCCTCCCTCCCCTTAA 1011 47.38 MNCVIDFSCLIFSSRLEMTEGSDFRHWDELIPDALGLIFSKLPLQEILTVIPRVCKSWAKAVLGPYCWQEIDIEEWSSRCQPDNVDRMLQMLVNRSGGSLRKLCVTGLHNSNIFSFIADHAGSLQTLRLPRSNISDALVEQIAGRLSAVTFFDLSYCDKISARSLESIGKNCKALVGICRNLHPLHTAGMPLLDDEAYAIAATMPKLEHLEMAYHPLSTKSVMTILSSCPNLEFLDLRGCWDVRLEDKFVAEKFPKLRVLGPLVRDYYERNEWDECSDYSYISDDLAWDFSADYFDDDAESYDDPWDDEDRLEGLELRFYEGIDEVGGGFGWPPSP 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11108573 11110833 + CmaCh01G016140.1 Cma01g01614 287307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01614 336 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 23 336 - -
Cma01g01614 336 Pfam F-box domain 27 69 IPR001810 GO:0005515
Cma01g01614 336 Gene3D Ribonuclease Inhibitor 22 263 IPR032675 -
Cma01g01614 336 SUPERFAMILY RNI-like 52 260 - -
Cma01g01614 336 PANTHER F-BOX PROTEIN FBW2 23 336 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01614 - - - cpep:111788238 650.203
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01614 Cma09g00566 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01614 Cma-Chr1:11108573 Cma12g00852 Cma-Chr12:6314063 1.23E-23 dispersed
Cma16g00718 Cma-Chr16:3740384 Cma01g01614 Cma-Chr1:11108573 3.20E-89 transposed
Cma01g01614 Cma-Chr1:11108573 Cma09g00566 Cma-Chr9:2570311 1.88E-174 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g435 . . . . Bpe02g00115 . . . . . Cma01g01614 Cma09g00566 . . . Cpe06g00430 . . . . . . . . . . . . . . . . . Cone17ag1208 Cone20ag0517 Lsi04g02245 Csa03g04456 Chy04g00246 . . . Bda11g00772 . . Bpe14g00460 . Bma02g00135 . Cmo01g01660 . . . . . . Cpe02g00366 Bhi09g02449 . . . . . . Cla11g01391 Cam11g1447 Cec11g1475 Cco11g1472 Clacu11g1606 Cmu11g1425 Cre11g1845 . . . Cme04g00275
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002091 1 4 1 1 2 1 3 1 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 1 2 2 6 3 1 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01614 Cma_Chr01 FPKM 3.679632 4.522979 7.990419 5.603709 20.496992 16.006552 19.546253 5.919758 6.792452 5.424577