Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01616 ATGGCGGTCGCCTCTTCCCCTCGTGAGAAGTATGTTTACATGGCCAAGCTCGCCGAGCAGGCCGAGCGCTACGAGGAGATGGTTGAGTTTATGGAAAAGGTCTCGGCCGCCATAGAAAACGAGGAGCTTACCGTCGAGGAGCGGAACCTTCTCTCTGTTGCTTACAAGAATGTTATTGGAGCTCGTAGAGCTTCCTGGAGGATAATTTCTTCCATCGAGCAGAAGGAGGAGAGCCGAGGGAACGATGATCATGTTTCCGTGATCAGAGAATACAGATCTAAGATCGAGAGCGAGCTCTCTAACATCTGTGATGGGATCCTCAAGCTTCTTGACTCCCGCCTTATTTCCTCCGCTGCTTCTGGAGATTCCAAGGTGTTTTATCTCAAAATGAAGGGTGATTATCATAGATACCTGGCTGAATTCAAGACCGGAGCCGAACGGAAGGAGGCTGCCGAAAGTACCCTCACTGCTTATAAATCTGCTCAGGATATCGCAAATTCTGAACTTGCTCCTACTCACCCCATACGACTTGGGCTGGCTTTGAACTTTTCAGTGTTCTATTACGAGATTCTGAATTCCCCTGATCGAGCTTGCAGCCTTGCCAAACAGGCTTTTGATGAAGCAATTGCTGAGTTGGATACACTGGGCGAGGAATCATACAAGGACAGCACTTTGATCATGCAACTTCTTCGTGACAACCTCACCCTATGGACTTCAGACATGCAGGATGATGGAGATGAGATTAAAGAAGCAGCTCCCAAGCGCGACGACGAATAA 777 48.65 MAVASSPREKYVYMAKLAEQAERYEEMVEFMEKVSAAIENEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDDHVSVIREYRSKIESELSNICDGILKLLDSRLISSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKSAQDIANSELAPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGDEIKEAAPKRDDE 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11112714 11115366 + CmaCh01G016160.1 Cma01g01616 287309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01616 258 SUPERFAMILY 14-3-3 protein 7 240 IPR036815 -
Cma01g01616 258 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Cma01g01616 258 Gene3D - 1 252 IPR036815 -
Cma01g01616 258 SMART 1433_4 8 250 IPR023410 -
Cma01g01616 258 PANTHER 14-3-3 PROTEIN 4 253 IPR000308 -
Cma01g01616 258 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
Cma01g01616 258 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Cma01g01616 258 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
Cma01g01616 258 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Cma01g01616 258 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Cma01g01616 258 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Cma01g01616 258 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Cma01g01616 258 Coils Coil 14 41 - -
Cma01g01616 258 PIRSF 14-3-3 2 250 IPR000308 -
Cma01g01616 258 PANTHER 14-3-3-LIKE PROTEIN GF14 CHI-RELATED 4 253 - -
Cma01g01616 258 Pfam 14-3-3 protein 14 238 IPR023410 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01616 Cma05g00507 CCT
Cma01g01616 Cma12g00167 CCT
Cma01g01616 Cma09g00568 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01616 Cma-Chr1:11112714 Cma14g01134 Cma-Chr14:8781087 9.88E-158 dispersed
Cma01g01607 Cma-Chr1:11072379 Cma01g01616 Cma-Chr1:11112714 8.58E-115 proximal
Cma01g01616 Cma-Chr1:11112714 Cma12g00167 Cma-Chr12:742588 8.62E-176 wgd
Cma01g01616 Cma-Chr1:11112714 Cma05g00507 Cma-Chr5:2430586 7.72E-176 wgd
Cma01g01616 Cma-Chr1:11112714 Cma09g00568 Cma-Chr9:2573521 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01616 K06630 - csv:101210822 489.189