Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01622 ATGGCGGTCTCCTTTCTCTCTTCCGTGCCTTCTTTTCTTCCTCTTCTTCCTCCTCGAACCGCCATTTCCCCCGCTACTGCACATCCCTTTCACACTGCTAGAGTTCGTTGTGGTCAGATCAAAACGGATGCTATTGCTAGCAACGATGATCGGTTTAGTAGAAGAGATGTTCTTCAAGGTTTCGGTGGTACGATTGCCTTGGGATTACTTGTGAGCTCTGACCATATGGTGGAACCGGCTTTTGCTGCTGATTTAATACAGCGCAGACAGCGATCTGAATTTTTATCAAATATCAAGGGGACCCTTTTTACTGCTATTAAGAACAATCCAGACATCGTTCCCTCCCTTTTAACATTAGCTCTGAATGATGCTGTAACTTACGACAAGGCTACGAAAACTGGAGGGCCAAATGGATCCATTCGCTTCAGTTCAGAGATCTCTAGACCTGAAAATGAGAAGTTATCTGCTGCTCTGAGTTTTTTAGAGGAAGCAAAGAAGGAAATAGATTCGTACTCTAAGGGTGGGCCCATTTCCTACGCAGATCTTATCCAACTTGCAGCACAAAGTGCCGTTAAATCCACTTTTCTAGCTTCTGCCATCAGAAAATGTGGTGGGAATGAAGAAAAGGGACAATTGTTATATTCTGCGTATGGTTCCAACGGACAGTGGGGCTTGTTTGAGAGGGAATTTGGAAGATCAGATTCTGAAGCGCCTGATCCTGAGGGAAGGGTTCCCATCTGGGGGAAAGCTAGCGTTCAGGAAATGAAAGAAAAGTTCTCTAATATTGGATTTGGTCCCCGACAGCTAGCTGTTCTGTCAGCATTTCTGGGTCCTGATCAAACAGCAATTGAGGAATTGCTAGCCTCAGATCCTGATGTTCTTCCATGGGTCCAAAAGTATCAACGTAGCCGTGAAACAGTATCCCAGACTGATTATGAGGTTGATCTAATCACCACTCTGACAAAAATAAGTAGGTTGGGACAACAGATAAATTACGAAGGTTATACCTATCCAGTTCAGAAAGTTGATTTGAGCAAACTCAAGCTATAG 1050 44.1 MAVSFLSSVPSFLPLLPPRTAISPATAHPFHTARVRCGQIKTDAIASNDDRFSRRDVLQGFGGTIALGLLVSSDHMVEPAFAADLIQRRQRSEFLSNIKGTLFTAIKNNPDIVPSLLTLALNDAVTYDKATKTGGPNGSIRFSSEISRPENEKLSAALSFLEEAKKEIDSYSKGGPISYADLIQLAAQSAVKSTFLASAIRKCGGNEEKGQLLYSAYGSNGQWGLFEREFGRSDSEAPDPEGRVPIWGKASVQEMKEKFSNIGFGPRQLAVLSAFLGPDQTAIEELLASDPDVLPWVQKYQRSRETVSQTDYEVDLITTLTKISRLGQQINYEGYTYPVQKVDLSKLKL 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11132416 11137228 - CmaCh01G016220.1 Cma01g01622 287315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01622 349 PRINTS Plant ascorbate peroxidase signature 113 128 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma01g01622 349 PRINTS Plant ascorbate peroxidase signature 131 141 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma01g01622 349 PRINTS Plant ascorbate peroxidase signature 145 169 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma01g01622 349 PRINTS Plant ascorbate peroxidase signature 273 298 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma01g01622 349 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 80 348 IPR044831 GO:0004601|GO:0034599
Cma01g01622 349 Gene3D - 267 349 - -
Cma01g01622 349 Gene3D - 82 265 - -
Cma01g01622 349 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC 80 348 - -
Cma01g01622 349 SUPERFAMILY Heme-dependent peroxidases 80 327 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma01g01622 349 CDD plant_peroxidase_like 98 346 - -
Cma01g01622 349 ProSiteProfiles Plant heme peroxidase family profile. 98 277 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma01g01622 349 Pfam Peroxidase 101 273 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01622 K00434 E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11] - csv:101210336 580.096
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01622 Cma09g00570 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01622 Cma-Chr1:11132416 Cma12g00339 Cma-Chr12:1722645 2.48E-16 dispersed
Cma01g01622 Cma-Chr1:11132416 Cma09g00570 Cma-Chr9:2580963 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g445 . . . Bda03g00483 . Bpe04g00436 . . . . Cma01g01622 Cma09g00570 Car01g01236 . . Cpe06g00433 . . . . . . . . . . . . . . . Cone4ag1323 . . . . Csa03g04459 Chy04g00242 . . . . . . . . . Sed13g2145 Cmo01g01665 Cmo09g00557 . . . Car09g00497 . Cpe02g00362 Bhi09g02455 Tan01g3804 Cmetu04g1099 . Hepe01g2140 Mch11g0679 . Cla11g01395 Cam11g1451 Cec11g1479 Cco11g1476 Clacu11g1610 Cmu11g1429 Cre11g1849 . . . Cme04g00270
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009724 1 2 0 0 1 0 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 0 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01622 Cma_Chr01 FPKM 0.0 0.0 5.835999 6.054258 75.895439 73.076019 80.874603 1.223481 1.553721 0.968152