Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01625 ATGGATCTTCGTATTGCAGTAGTAATGCCATTTTCCTGTCGCAATGGGTCTGCAAAGCTATGGAGGTTGCTGGTATCGACATCTCCTCCTGTTGTACTCCTCTGTCTTCATCCGTGGATTAAACATCAAACCTGGTCAGTGATGATGATGAGATTTGATCGCCCAGAATCCTTGGATTCTTTCAGTTCCATCTTCACCCCTAAAGAGCAACCGAGCTCCACCACCATAGGCGGATACAGCAAGGAGTTTCAGGCAATGTTAGACAGTTTGGAGGAAGAAGACAACAGTGAAGATGGCGGTGGAAGCAGCGGTTCGGCACCGGAGAGAAAACGCCGGCTGAAGCCGGACCAAGTGAAGGCCTTGGAGAGACATTTTGAAGTGGAAAACAAGCTCGAACCAGAGAGAAAAATGAAGATAGCTACTGAATTAGAGCTCGAGCCAAGGCAAGTAACAATTTGGTTTCAAAATCGCAGAGCCCGTTGGAAAACAAAGCAATTAGAGAGAGATTATGGAGTTCTTAAAGCCAATTACGATGCTCTTAAGCTGGATTATGATGTTCTTGAGAAAGAAAATGCTTCTCTTGCTTCAAAGGTGAGAGAGTTGAGGGAAAAAGTAAGCAGAGAAGGAACAAAGATGAAAATTCAAAGGGAATTGAAAGATGAGAAGAACTCATTTGTTTCCACTAATAACAACTCTTCTCTGAATTCGATGTTGAATTCCTTTGAACTTTCCAGGAAAGTTTATGAGAATCAGACTCAGTTTACGAAGGCCATGAATGAAGATCAAAGCTTGTTCAATACAGAGGAGCCTTGCAATTTCTGCTCTGTTGATCAAGCTCCCTCCCTCCACTGGTAA 855 43.39 MDLRIAVVMPFSCRNGSAKLWRLLVSTSPPVVLLCLHPWIKHQTWSVMMMRFDRPESLDSFSSIFTPKEQPSSTTIGGYSKEFQAMLDSLEEEDNSEDGGGSSGSAPERKRRLKPDQVKALERHFEVENKLEPERKMKIATELELEPRQVTIWFQNRRARWKTKQLERDYGVLKANYDALKLDYDVLEKENASLASKVRELREKVSREGTKMKIQRELKDEKNSFVSTNNNSSLNSMLNSFELSRKVYENQTQFTKAMNEDQSLFNTEEPCNFCSVDQAPSLHW 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11149036 11155579 - CmaCh01G016250.1 Cma01g01625 287318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01625 284 SMART HOX_1 107 168 IPR001356 GO:0003677
Cma01g01625 284 Coils Coil 170 204 - -
Cma01g01625 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 55 267 IPR045224 GO:0003700
Cma01g01625 284 Pfam Homeodomain 109 162 IPR001356 GO:0003677
Cma01g01625 284 SUPERFAMILY Homeodomain-like 96 166 IPR009057 -
Cma01g01625 284 Gene3D - 100 169 - -
Cma01g01625 284 CDD homeodomain 109 165 IPR001356 GO:0003677
Cma01g01625 284 MobiDBLite consensus disorder prediction 90 115 - -
Cma01g01625 284 ProSiteProfiles 'Homeobox' domain profile. 104 164 IPR001356 GO:0003677
Cma01g01625 284 Pfam Homeobox associated leucine zipper 164 205 IPR003106 GO:0006355|GO:0043565
Cma01g01625 284 ProSitePatterns 'Homeobox' domain signature. 139 162 IPR017970 GO:0000981|GO:0006355
Cma01g01625 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6 55 267 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01625 K09338 HD-ZIP; homeobox-leucine zipper protein - csv:101209840 281.567
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01625 Cma-Chr1:11149036 Cma16g00728 Cma-Chr16:3829042 1.82E-47 dispersed
Cma01g01625 Cma-Chr1:11149036 Cma07g00559 Cma-Chr7:2415764 7.40E-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g449 . . . . . . . . . . Cma01g01625 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02252 Csa03g04463 Chy04g00238 . . . . . . . . . . Cmo01g01669 . . . . . . Cpe02g00358 Bhi09g02462 Tan01g3812 . . Hepe01g2145 . . Cla11g01398 Cam11g1455 Cec11g1483 Cco11g1480 Clacu11g1614 Cmu11g1433 Cre11g1853 . . . Cme04g00266
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014196 0 2 0 0 0 0 1 0 0 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 0 1 3 0 22
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34352 PF00046 Homeodomain 4.20E-16 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01625 Cma_Chr01 FPKM 0.32328 0.715442 6.239375 5.920167 5.268575 3.689647 4.471742 1.735581 2.064615 2.122683