Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01633 TTATTTGGACCCAAGAGCAATAAAAGAACTTGGCCAATTATTTCAAGAAACAACAGTGACAACTCGTCTCCCGGCGATGCGAAGCGGGTTGAACCAGCGCAACTCCCATCAGGAATGCGTCCTTTTATGCGCACAGCTCTTTCTATGTCACGCTTGGTTTCTGCCCACTCATTCCATCTCAAATCGAACGCGACACCGATAATTTCCCATTCTTCTCGCTCTCTTCGAATCCCTCTCTTCAAGCTCCCACAGGGTGTTTGTCGGCCGAATTCGAGCTCTGAGTTTCGTTGGTTTTGCTCGAAGTCTCGGATTGCTGCTGCAACCATGCAGAATCGGGAGTCGGTTTCGTATCTGACGCAGAAGGAAGCCGCTGAGGTCGATGAAATTCTCATGGGTCCTCTCGGGTTTAGCGTCGAACAGTTGATGGAGCTGGCTGGATTGAGCGTAGCCACTTCAATAGCAGAGGTTTACAAAGTCAATGAGTATAAGCGCGTTCTTGTTATCTGTGGCCCTGGAAACAATGGTGGAGATGGTCTCGTGGCTGCTCGTCATCTGTTTCACTTCGGATACAATCCATCAATTTGTTATCCAAAGAGGACTCCGAAGCCTCTTTATGCCGGTTTGGTTACTCAGCTGGAATCACTGTCAGTTCCTTTCGTGTCTGTAGAGGACTTGCCTTTGGATTTGTCGAAGGATTTTGACATTATAATCGATGCAATCTTTGGGTTCTCGTTCCATGGTGCTCCAAGGCCACCATTCAATGATTTGATCCAAAGGCTTGTCTCTTTAAATGAGTACAAGGAAGCAAAGCAAAGATTTCCTGTTGTTGTTTCTGTAGATATTCCATCCGGATGGCATGTCGAAGAAGGGGATATTAGTGATAGCAGCTTTAAACCCGATATGTTGGTTTCTCTGACTGCCCCAAAGCTATGTGCAAAGAGATTCCATGGTCCGCATCATTTTTTAGGTGGCAGATTTGTGCCACCGTCTATCGTGAGCAAATTTAACCTTCATCTTCCTCCTTATCCTGGCACGGCAATGTGTGTTCGTATAGGAAAGCCTCCACAAGTTGATATAGCTGCACTTAGAGAAAACTATATTTCTCCTGAATTTGTTGAAGATAATGTTGAAGCTGATCCTATTCATCAGTTCCGCAAATGGTTCGATGAAGCAATTGCTGCTAATTTACGGGAACCTAATGCTATGTCATTGTCTACTGCTACGAGCGATGGAAAACCATCATCTCGTATGGTTTTGCTAAAAGGATTTGATGAAGATGGTTTTGTCTGGTACACAAATTATGGAAGTCGGAAAGCACACGATTTAGCTGAAAATCCACGTGCTTCGCTTCTTTTCTTCTGGGACGGTCTTAATAGGCAGGTAAGAGTGGAAGGAACAGTGCAGAAAGTTTCCGAAGAGGAATCGGAGCAGTACTTCCACAGTCGTCCTCGTGGAAGTCAGCTCGGTGCAATCGTTAGCCCACAGAGTTCTGTGGTTCCTGGAAGACATTTTCTCATTGATAAGTTCAAAGAACTAGAGGATAGATACTCGAATGGAAGTTTGATTCCCAAACCAAAATACTGGGGCGGATACAGGCTTAAACCAGAAACTTTTGAGTTTTGGCAGGGGCAGCCATCTCGGCTGCACGACAGGTTGCAGTATTCCCCTTGCGAGATAGAGGGGAAAAAGGTTTGGAAAGTAGAACGGTTGGCTCCGTGA 1719 45.61 LFGPKSNKRTWPIISRNNSDNSSPGDAKRVEPAQLPSGMRPFMRTALSMSRLVSAHSFHLKSNATPIISHSSRSLRIPLFKLPQGVCRPNSSSEFRWFCSKSRIAAATMQNRESVSYLTQKEAAEVDEILMGPLGFSVEQLMELAGLSVATSIAEVYKVNEYKRVLVICGPGNNGGDGLVAARHLFHFGYNPSICYPKRTPKPLYAGLVTQLESLSVPFVSVEDLPLDLSKDFDIIIDAIFGFSFHGAPRPPFNDLIQRLVSLNEYKEAKQRFPVVVSVDIPSGWHVEEGDISDSSFKPDMLVSLTAPKLCAKRFHGPHHFLGGRFVPPSIVSKFNLHLPPYPGTAMCVRIGKPPQVDIAALRENYISPEFVEDNVEADPIHQFRKWFDEAIAANLREPNAMSLSTATSDGKPSSRMVLLKGFDEDGFVWYTNYGSRKAHDLAENPRASLLFFWDGLNRQVRVEGTVQKVSEEESEQYFHSRPRGSQLGAIVSPQSSVVPGRHFLIDKFKELEDRYSNGSLIPKPKYWGGYRLKPETFEFWQGQPSRLHDRLQYSPCEIEGKKVWKVERLAP 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11187019 11192382 + CmaCh01G016330.1 Cma01g01633 287326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01633 572 MobiDBLite consensus disorder prediction 10 25 - -
Cma01g01633 572 ProSiteProfiles YjeF N-terminal domain profile. 123 359 IPR004443 -
Cma01g01633 572 PANTHER NAD(P)H-HYDRATE EPIMERASE 109 556 IPR032976 -
Cma01g01633 572 Hamap Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 365 572 IPR000659 GO:0004733|GO:0008615|GO:0010181
Cma01g01633 572 Pfam Pyridoxamine 5'-phosphate oxidase 388 474 IPR011576 -
Cma01g01633 572 SUPERFAMILY FMN-binding split barrel 373 572 - -
Cma01g01633 572 TIGRFAM pdxH: pyridoxamine 5'-phosphate oxidase 355 572 IPR000659 GO:0004733|GO:0008615|GO:0010181
Cma01g01633 572 Pfam Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 528 572 IPR019576 -
Cma01g01633 572 ProSitePatterns Pyridoxamine 5'-phosphate oxidase signature. 538 551 IPR019740 GO:0016638
Cma01g01633 572 Gene3D - 366 562 IPR012349 -
Cma01g01633 572 Gene3D - 113 351 IPR036652 -
Cma01g01633 572 Pfam YjeF-related protein N-terminus 139 311 IPR004443 -
Cma01g01633 572 MobiDBLite consensus disorder prediction 1 36 - -
Cma01g01633 572 SUPERFAMILY YjeF N-terminal domain-like 116 346 IPR036652 -
Cma01g01633 572 PANTHER NAD(P)H-HYDRATE EPIMERASE 109 556 - -
Cma01g01633 572 TIGRFAM yjeF_nterm: YjeF family N-terminal domain 120 315 IPR004443 -
Cma01g01633 572 Hamap NAD(P)H-hydrate epimerase [nnrE]. 119 354 IPR004443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01633 K23998 PPOX; pyridoxal 5'-phosphate synthase / NAD(P)H-hydrate epimerase [EC:1.4.3.5 5.1.99.6] - csv:101207469 920.998
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g02119 Cma-Chr14:14591068 Cma01g01633 Cma-Chr1:11187019 6.08E-06 transposed
Cma01g01633 Cma-Chr1:11187019 Cma09g00583 Cma-Chr9:2684760 9.06E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g476 . . . . Bpe02g00130 Bpe04g00429 . Bma01g02596 . . Cma01g01633 . . . . . . . . . . . . . . . . . . . . Cone4ag1312 Cone7ag1255 . . Lsi04g02266 Csa03g04475 Chy04g00226 . . . Bda11g00785 . . . . . Sed05g1572 Cmo01g01678 . . . . . . . Bhi09g02478 Tan01g3831 . . Hepe01g2157 Mch11g0694 . Cla11g01409 Cam11g1466 Cec11g1494 Cco11g1490 Clacu11g1627 Cmu11g1444 Cre11g1863 . . . Cme04g00252
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004922 1 3 2 2 2 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 6 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01633 Cma_Chr01 FPKM 15.446536 18.290277 32.523491 32.52972 30.232111 29.117723 32.166489 20.142336 19.568096 21.907465